Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HRE60_RS00340 Genome accession   NZ_CP054153
Coordinates   58283..59422 (+) Length   379 a.a.
NCBI ID   WP_002886327.1    Uniprot ID   A0AB33ZAI2
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53283..64422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS00320 (HRE60_00320) - 55348..55569 (+) 222 WP_002886321.1 hypothetical protein -
  HRE60_RS00325 (HRE60_00325) ruvA 55727..56317 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  HRE60_RS00330 (HRE60_00330) - 56326..56880 (+) 555 WP_004181971.1 DNA-3-methyladenine glycosylase I -
  HRE60_RS00335 (HRE60_00335) cinA 56977..58242 (+) 1266 WP_181670842.1 competence/damage-inducible protein A Machinery gene
  HRE60_RS00340 (HRE60_00340) recA 58283..59422 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  HRE60_RS00345 (HRE60_00345) spx 59592..59990 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40951.51 Da        Isoelectric Point: 4.7970

>NTDB_id=451140 HRE60_RS00340 WP_002886327.1 58283..59422(+) (recA) [Streptococcus salivarius strain DB-B5]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=451140 HRE60_RS00340 WP_002886327.1 58283..59422(+) (recA) [Streptococcus salivarius strain DB-B5]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGACGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAAGGTGCAGTGATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GTTCAGGCTCGCTGGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGCGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATCGATGAACTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGATAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGAAAACTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTAGTCAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGCATTATTCAAAAAGCTGGAGCATGGTTCTCATATAATGGAGAGAAGATTGGTCAAGGGTCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTAGATTCAA
CCATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902
  recA Streptococcus pyogenes NZ131

89.974

100

0.9
  recA Streptococcus mitis NCTC 12261

86.423

100

0.873
  recA Streptococcus mitis SK321

86.352

100

0.868
  recA Streptococcus pneumoniae Rx1

85.195

100

0.865
  recA Streptococcus pneumoniae D39

85.195

100

0.865
  recA Streptococcus pneumoniae R6

85.195

100

0.865
  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865
  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

69.231

89.182

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541
  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536
  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53
  recA Vibrio cholerae strain A1552

58.944

89.974

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.944

89.974

0.53
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515
  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507
  recA Helicobacter pylori 26695

56.305

89.974

0.507
  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501
  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499