Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC77_RS11080 Genome accession   NZ_CP053989
Coordinates   2275398..2276441 (+) Length   347 a.a.
NCBI ID   WP_047940070.1    Uniprot ID   A0A0J1LH37
Organism   Niallia circulans strain FDAARGOS_783     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270398..2281441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS11055 (FOC77_11055) - 2270788..2271045 (+) 258 WP_047940065.1 DUF3243 domain-containing protein -
  FOC77_RS11060 (FOC77_11060) - 2271486..2272277 (+) 792 WP_047940066.1 YmfK family protein -
  FOC77_RS11065 (FOC77_11065) - 2272298..2273182 (+) 885 WP_047940067.1 RodZ domain-containing protein -
  FOC77_RS11070 (FOC77_11070) pgsA 2273299..2273877 (+) 579 WP_047940068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC77_RS11075 (FOC77_11075) cinA 2273979..2275220 (+) 1242 WP_047940069.1 competence/damage-inducible protein A Machinery gene
  FOC77_RS11080 (FOC77_11080) recA 2275398..2276441 (+) 1044 WP_047940070.1 recombinase RecA Machinery gene
  FOC77_RS11085 (FOC77_11085) rny 2276996..2278564 (+) 1569 WP_047940071.1 ribonuclease Y -
  FOC77_RS11090 (FOC77_11090) - 2278706..2279503 (+) 798 WP_061796644.1 TIGR00282 family metallophosphoesterase -
  FOC77_RS11095 (FOC77_11095) spoVS 2279689..2279949 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  FOC77_RS11100 (FOC77_11100) - 2280455..2281378 (+) 924 WP_156485383.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37747.98 Da        Isoelectric Point: 4.9076

>NTDB_id=449790 FOC77_RS11080 WP_047940070.1 2275398..2276441(+) (recA) [Niallia circulans strain FDAARGOS_783]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQADRVISTSPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYNDERLGQGRENAKQFLKENPEMRLEIQKK
IRDHYGLDKEVTLQPDNDDQEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=449790 FOC77_RS11080 WP_047940070.1 2275398..2276441(+) (recA) [Niallia circulans strain FDAARGOS_783]
TTGAGTGATCGTCAAGCTGCATTAGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTAGTATTATGAAGCT
GGGAGAGCAAGCAGATAGAGTCATTTCTACTAGTCCAAGTGGATCTTTAGCTTTAGATGCAGCCCTAGGTGTTGGTGGAT
ATCCAAGAGGTCGTATTGTGGAAATTTATGGTCCTGAAAGTTCAGGTAAAACAACAGTAGCGCTACATGCTATTGCTGAG
GTTCAGGCAAATGGCGGACAAGCAGCATTTATTGATGCAGAGCATGCATTGGATCCAGTTTATGCACAAAAGCTTGGCGT
TAATATTGATGAATTATTACTTTCTCAACCAGATACCGGAGAACAAGCATTAGAAATCGCGGAGGCCTTAGTACGAAGCG
GGGCAGTGGATATTTTAGTTATTGACTCTGTAGCAGCACTTGTACCAAAAGCAGAAATTGAAGGCGAAATGGGAGATTCT
CACGTTGGACTTCAAGCACGTTTAATGTCACAGGCGCTTCGTAAGTTATCTGGGGCTATTAATAAATCCAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTAATGTTCGGAAATCCTGAAACAACTCCTGGTGGTCGTGCGCTAA
AATTCTATTCATCTGTCCGACTAGAAGTTCGTCGTGCTGAAACGTTAAAACAAGGAACAGATATGGTAGGAAACAAAACA
AAAATCAAAGTGGTAAAAAATAAAGTAGCACCACCTTTCAAAGTAGCGGAAGTTGATATCATGTATGGAGAAGGTATCTC
TAAAGAAGGAGAAATTATTGACCTTGGTTCAGAACTTGATATTGTTCAAAAAAGTGGAGCTTGGTATTCTTACAATGACG
AAAGATTAGGCCAAGGCCGTGAAAATGCGAAGCAATTCTTAAAAGAAAATCCAGAAATGCGCTTAGAGATTCAAAAGAAA
ATTCGTGATCATTATGGGCTGGATAAAGAAGTAACATTACAGCCTGATAATGACGACCAAGAACAATTCGAATTAATCGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1LH37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.524

0.847
  recA Latilactobacillus sakei subsp. sakei 23K

72.365

100

0.732
  recA Streptococcus mitis SK321

66.952

100

0.677
  recA Streptococcus mitis NCTC 12261

66.952

100

0.677
  recA Streptococcus pneumoniae Rx1

68.116

99.424

0.677
  recA Streptococcus pneumoniae D39

68.116

99.424

0.677
  recA Streptococcus pneumoniae R6

68.116

99.424

0.677
  recA Streptococcus pneumoniae TIGR4

68.116

99.424

0.677
  recA Streptococcus mutans UA159

67.733

99.135

0.671
  recA Lactococcus lactis subsp. cremoris KW2

68.452

96.83

0.663
  recA Streptococcus pyogenes NZ131

69.207

94.524

0.654
  recA Neisseria gonorrhoeae MS11

65.861

95.389

0.628
  recA Neisseria gonorrhoeae MS11

65.861

95.389

0.628
  recA Neisseria gonorrhoeae strain FA1090

65.861

95.389

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.776

96.542

0.625
  recA Vibrio cholerae strain A1552

64.776

96.542

0.625
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.202

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Helicobacter pylori strain NCTC11637

62.985

96.542

0.608
  recA Helicobacter pylori 26695

62.985

96.542

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

94.236

0.605
  recA Glaesserella parasuis strain SC1401

60.405

99.712

0.602
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Acinetobacter baumannii D1279779

62.112

92.795

0.576
  recA Acinetobacter baylyi ADP1

62.112

92.795

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.219

0.573