Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC77_RS11075 Genome accession   NZ_CP053989
Coordinates   2273979..2275220 (+) Length   413 a.a.
NCBI ID   WP_047940069.1    Uniprot ID   A0A0J1IQZ7
Organism   Niallia circulans strain FDAARGOS_783     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2268979..2280220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS11050 (FOC77_11050) - 2269971..2270693 (+) 723 WP_047940064.1 SDR family oxidoreductase -
  FOC77_RS11055 (FOC77_11055) - 2270788..2271045 (+) 258 WP_047940065.1 DUF3243 domain-containing protein -
  FOC77_RS11060 (FOC77_11060) - 2271486..2272277 (+) 792 WP_047940066.1 YmfK family protein -
  FOC77_RS11065 (FOC77_11065) - 2272298..2273182 (+) 885 WP_047940067.1 RodZ domain-containing protein -
  FOC77_RS11070 (FOC77_11070) pgsA 2273299..2273877 (+) 579 WP_047940068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC77_RS11075 (FOC77_11075) cinA 2273979..2275220 (+) 1242 WP_047940069.1 competence/damage-inducible protein A Machinery gene
  FOC77_RS11080 (FOC77_11080) recA 2275398..2276441 (+) 1044 WP_047940070.1 recombinase RecA Machinery gene
  FOC77_RS11085 (FOC77_11085) rny 2276996..2278564 (+) 1569 WP_047940071.1 ribonuclease Y -
  FOC77_RS11090 (FOC77_11090) - 2278706..2279503 (+) 798 WP_061796644.1 TIGR00282 family metallophosphoesterase -
  FOC77_RS11095 (FOC77_11095) spoVS 2279689..2279949 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45191.00 Da        Isoelectric Point: 5.9223

>NTDB_id=449789 FOC77_RS11075 WP_047940069.1 2273979..2275220(+) (cinA) [Niallia circulans strain FDAARGOS_783]
MNAEIIAVGSELLLGQIANTNAQFISKHLADLGVNVYYHTVVGDNAARLEEAIKIAENRAQLLIFSGGLGPTKDDLTKET
IAKHIGKELVFDKTALASIEDYFVKTKRTMTENNKKQALVLEGSDVLPNDHGMAPGMFLKKDNRFYMLLPGPPKEIQPMF
VKYGFPAIQKQMTSKDVIVSRVLRFFGIGESLLETKIEDLIDAQTNPTIAPLAGDGEVTLRITCKHDSVEEADKLIAKTE
EEIFARVGEFFYGYEDTTLMNELSHILLKKNLTVAAAESLTGGLFQKEITGIPGAGNIFKGGIVCYTNEVKHQILQVKES
TIKEHGVVSEQCAKELAENVARLLNADIGISFTGVAGPNELEGNPVGTVYIGIAKSGEPTKVEKLALSGTRAGNRVRSVR
YGQYFLLKMLEDK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=449789 FOC77_RS11075 WP_047940069.1 2273979..2275220(+) (cinA) [Niallia circulans strain FDAARGOS_783]
ATGAATGCAGAGATTATTGCTGTTGGCTCAGAATTATTACTTGGACAAATTGCTAATACAAATGCTCAATTTATATCCAA
GCATTTAGCCGACTTAGGAGTAAATGTTTATTATCATACAGTAGTTGGAGATAATGCAGCTCGTTTAGAGGAAGCGATAA
AAATCGCTGAAAATCGAGCGCAATTGCTTATTTTCTCCGGCGGATTAGGTCCAACAAAGGATGATTTAACGAAAGAAACG
ATTGCCAAGCATATAGGGAAAGAGTTGGTTTTTGATAAAACAGCTTTAGCTTCCATTGAAGACTATTTTGTCAAAACGAA
ACGCACTATGACGGAAAACAATAAAAAACAAGCATTGGTATTAGAGGGAAGCGACGTTCTTCCAAATGACCATGGGATGG
CACCAGGGATGTTTTTAAAAAAAGACAATCGTTTTTATATGCTTTTACCAGGACCACCGAAAGAAATTCAGCCAATGTTT
GTCAAATATGGATTTCCAGCTATACAAAAGCAAATGACAAGCAAAGATGTCATCGTTTCGCGCGTGCTTCGCTTCTTCGG
CATTGGAGAATCGCTGCTGGAAACAAAAATAGAAGACTTAATTGATGCCCAGACTAATCCGACTATTGCCCCGCTCGCAG
GAGATGGAGAGGTAACATTACGTATCACATGTAAACATGATTCTGTAGAAGAAGCAGATAAATTGATTGCCAAAACAGAA
GAAGAAATATTCGCACGCGTAGGAGAATTTTTCTATGGATATGAGGACACTACATTAATGAATGAGCTTTCCCATATTTT
ATTAAAGAAAAATTTAACAGTAGCAGCAGCAGAGAGTCTGACAGGAGGACTGTTTCAGAAGGAGATAACAGGAATTCCAG
GTGCTGGGAATATTTTTAAAGGGGGAATTGTTTGCTATACAAATGAAGTAAAGCATCAAATCCTGCAAGTAAAAGAGTCG
ACGATTAAAGAACATGGTGTGGTAAGCGAGCAATGTGCGAAAGAGCTTGCAGAGAATGTGGCACGTTTATTAAATGCCGA
TATTGGGATAAGCTTCACAGGTGTTGCAGGCCCAAATGAATTAGAAGGAAACCCAGTAGGTACCGTTTATATTGGGATTG
CTAAAAGCGGGGAGCCGACAAAAGTAGAGAAGTTAGCATTAAGTGGAACAAGAGCAGGTAATCGAGTTCGAAGTGTGAGA
TACGGTCAATATTTCTTATTAAAAATGTTAGAAGATAAATAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1IQZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.097

99.516

0.598
  cinA Streptococcus mitis SK321

47.381

100

0.482
  cinA Streptococcus pneumoniae TIGR4

46.905

100

0.477
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.429

100

0.472
  cinA Streptococcus pneumoniae R6

46.429

100

0.472
  cinA Streptococcus pneumoniae D39

46.19

100

0.47
  cinA Streptococcus mutans UA159

46.552

98.305

0.458
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38