Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GE023_RS10225 Genome accession   NZ_CP053789
Coordinates   2081454..2082590 (-) Length   378 a.a.
NCBI ID   WP_093999149.1    Uniprot ID   A0A3P5XNV7
Organism   Streptococcus canis strain HL_98_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076454..2087590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS10200 (GE023_010195) - 2077643..2079202 (-) 1560 WP_164406144.1 DUF2079 domain-containing protein -
  GE023_RS11095 - 2079342..2079467 (-) 126 WP_257865518.1 hypothetical protein -
  GE023_RS10205 (GE023_010200) - 2079545..2079850 (-) 306 WP_003045716.1 DUF1292 domain-containing protein -
  GE023_RS10210 (GE023_010205) ruvX 2079861..2080280 (-) 420 WP_039994721.1 Holliday junction resolvase RuvX -
  GE023_RS10215 (GE023_010210) - 2080277..2080546 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GE023_RS10220 (GE023_010215) spx 2080658..2081056 (-) 399 WP_093999148.1 transcriptional regulator Spx -
  GE023_RS10225 (GE023_010220) recA 2081454..2082590 (-) 1137 WP_093999149.1 recombinase RecA Machinery gene
  GE023_RS10230 (GE023_010225) cinA 2082695..2083966 (-) 1272 WP_159305738.1 competence/damage-inducible protein A Machinery gene
  GE023_RS11100 - 2084083..2084241 (-) 159 WP_223824822.1 VOC family protein -
  GE023_RS10240 (GE023_010235) - 2084439..2085011 (-) 573 WP_159305737.1 DNA-3-methyladenine glycosylase I -
  GE023_RS10245 (GE023_010240) ruvA 2085021..2085617 (-) 597 WP_003045733.1 Holliday junction branch migration protein RuvA -
  GE023_RS10250 (GE023_010245) - 2085601..2086839 (-) 1239 WP_003045734.1 MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40645.21 Da        Isoelectric Point: 4.8389

>NTDB_id=447185 GE023_RS10225 WP_093999149.1 2081454..2082590(-) (recA) [Streptococcus canis strain HL_98_2]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDDIDRKVRVKFGLLEDAEEESATTAASEEMDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=447185 GE023_RS10225 WP_093999149.1 2081454..2082590(-) (recA) [Streptococcus canis strain HL_98_2]
TTGGCAAAAAAATTGAAAAAAAACGAAGAAATCACGAAAAAATTCGGTGACGAACGTCGCAAAGCGCTTGATGATGCTTT
GAAAAATATTGAAAAAGACTTTGGCAAAGGTGCGGTAATGCGCCTTGGAGAACGTGCGGAGCAAAAGGTACAAGTCATGA
GTTCAGGAAGTCTGGCTCTCGATATTGCTCTTGGGGCAGGCGGTTATCCTAAAGGGCGTATTATTGAAATTTACGGACCA
GAATCTTCAGGTAAAACGACTGTAGCTCTTCACGCTGTAGCCCAAGCACAAAAAGAGGGGGGCATCGCAGCCTTTATTGA
TGCCGAGCATGCACTTGATCCAGCTTATGCTGCTGCACTTGGGGTTAATATTGACGAGTTACTTTTATCTCAACCAGATT
CTGGTGAGCAAGGCCTTGAAATTGCTGGTAAATTAATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTGGCA
GCCTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGAGATAATCACGTTGGCTTGCAAGCGCGTATGATGAGTCAGGC
TATGCGTAAATTATCAGCTTCTATTAATAAAACGAAAACCATCGCTATCTTTATTAATCAATTACGTGAAAAAGTTGGGG
TGATGTTTGGTAATCCAGAAACAACACCAGGTGGTCGTGCCCTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACTACTCAAATTAAGGGAACGGGTGATCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTTGCTCCCCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGAGAAGGCATTTCTCGTACTGGAGAGCTTGTGAAAA
TTGCTTCTGATTTAGATATTATTCAAAAAGCAGGCGCTTGGTTCTCTTACAATGGTGAGAAAATTGGCCAAGGTTCCGAA
AATGCTAAGCGTTATTTGGCGGATCATCCAGAATTATTTGATGACATTGACCGTAAAGTTCGTGTCAAATTTGGCTTGTT
AGAAGATGCTGAGGAAGAATCTGCTACGACAGCAGCATCAGAAGAGATGGATGATCTTGTTCTAGATTTAGACAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5XNV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

97.09

100

0.971
  recA Streptococcus mutans UA159

87.467

100

0.886
  recA Streptococcus pneumoniae Rx1

84.156

100

0.857
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.857
  recA Streptococcus pneumoniae D39

84.156

100

0.857
  recA Streptococcus pneumoniae R6

84.156

100

0.857
  recA Streptococcus mitis SK321

84.777

100

0.854
  recA Streptococcus mitis NCTC 12261

84.514

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

78.187

93.386

0.73
  recA Latilactobacillus sakei subsp. sakei 23K

70.088

90.212

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

87.037

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

89.153

0.55
  recA Acinetobacter baylyi ADP1

59.259

92.857

0.55
  recA Acinetobacter baumannii D1279779

58.64

93.386

0.548
  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537
  recA Neisseria gonorrhoeae MS11

61.329

87.566

0.537
  recA Neisseria gonorrhoeae MS11

61.329

87.566

0.537
  recA Neisseria gonorrhoeae strain FA1090

61.329

87.566

0.537
  recA Vibrio cholerae strain A1552

57.759

92.063

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.759

92.063

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.45

0.532
  recA Pseudomonas stutzeri DSM 10701

56.286

92.593

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516
  recA Helicobacter pylori strain NCTC11637

57.879

87.302

0.505
  recA Helicobacter pylori 26695

57.879

87.302

0.505
  recA Ralstonia pseudosolanacearum GMI1000

58.991

83.862

0.495