Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPC59_RS05460 Genome accession   NZ_CP053619
Coordinates   1130281..1131333 (+) Length   350 a.a.
NCBI ID   WP_005688187.1    Uniprot ID   A0A5P5ZCT3
Organism   Lacticaseibacillus rhamnosus strain LV108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125281..1136333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC59_RS05440 (HPC59_05660) ymfI 1126428..1127156 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  HPC59_RS05445 (HPC59_05665) - 1127243..1128169 (+) 927 WP_005713296.1 helix-turn-helix domain-containing protein -
  HPC59_RS05450 (HPC59_05670) pgsA 1128166..1128759 (+) 594 WP_005713297.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HPC59_RS05455 (HPC59_05675) cinA 1128988..1130229 (+) 1242 WP_005713299.1 competence/damage-inducible protein A Machinery gene
  HPC59_RS05460 (HPC59_05680) recA 1130281..1131333 (+) 1053 WP_005688187.1 recombinase RecA Machinery gene
  HPC59_RS05465 (HPC59_05690) rny 1132062..1133633 (+) 1572 WP_005684479.1 ribonuclease Y -
  HPC59_RS05470 (HPC59_05695) - 1133722..1134378 (-) 657 WP_087942809.1 YigZ family protein -
  HPC59_RS05475 (HPC59_05700) - 1134406..1135671 (+) 1266 WP_005713659.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37586.87 Da        Isoelectric Point: 5.5040

>NTDB_id=445650 HPC59_RS05460 WP_005688187.1 1130281..1131333(+) (recA) [Lacticaseibacillus rhamnosus strain LV108]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=445650 HPC59_RS05460 WP_005688187.1 1130281..1131333(+) (recA) [Lacticaseibacillus rhamnosus strain LV108]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGGAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCTGAAAATGCCATGGATCCCAAATATGCAGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTGGAAATTGCCGATGAGCTGGTTG
CATCGGGTGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTCGGGTTACAGGCACGGCTAATGTCGCAGGCTTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATCAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAGTTTTATGCCACTGTGCGTATGGAAGTGCGTCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCACCTTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGTGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCGTGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGTTGCGTCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCTGCATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P5ZCT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.424

94.286

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

70.783

94.857

0.671
  recA Streptococcus pneumoniae Rx1

66.959

97.714

0.654
  recA Streptococcus pneumoniae D39

66.959

97.714

0.654
  recA Streptococcus pneumoniae R6

66.959

97.714

0.654
  recA Streptococcus pneumoniae TIGR4

66.959

97.714

0.654
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Streptococcus mitis NCTC 12261

68.693

94

0.646
  recA Streptococcus mitis SK321

68.693

94

0.646
  recA Streptococcus mutans UA159

68.693

94

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.867

94.857

0.634
  recA Ralstonia pseudosolanacearum GMI1000

62.54

90

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.878

94

0.563
  recA Acinetobacter baylyi ADP1

61.442

91.143

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.286

0.56
  recA Acinetobacter baumannii D1279779

61.129

91.143

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.567

96.286

0.554
  recA Glaesserella parasuis strain SC1401

55.362

98.571

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.561

91.143

0.543
  recA Vibrio cholerae strain A1552

59.561

91.143

0.543
  recA Pseudomonas stutzeri DSM 10701

59.006

92

0.543
  recA Helicobacter pylori strain NCTC11637

55.657

93.429

0.52
  recA Helicobacter pylori 26695

55.352

93.429

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.385

92.857

0.514