Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HPC59_RS05455 Genome accession   NZ_CP053619
Coordinates   1128988..1130229 (+) Length   413 a.a.
NCBI ID   WP_005713299.1    Uniprot ID   A0A7Y7UHQ1
Organism   Lacticaseibacillus rhamnosus strain LV108     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123988..1135229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC59_RS05435 (HPC59_05655) yfmH 1125136..1126428 (+) 1293 WP_005713292.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HPC59_RS05440 (HPC59_05660) ymfI 1126428..1127156 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  HPC59_RS05445 (HPC59_05665) - 1127243..1128169 (+) 927 WP_005713296.1 helix-turn-helix domain-containing protein -
  HPC59_RS05450 (HPC59_05670) pgsA 1128166..1128759 (+) 594 WP_005713297.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HPC59_RS05455 (HPC59_05675) cinA 1128988..1130229 (+) 1242 WP_005713299.1 competence/damage-inducible protein A Machinery gene
  HPC59_RS05460 (HPC59_05680) recA 1130281..1131333 (+) 1053 WP_005688187.1 recombinase RecA Machinery gene
  HPC59_RS05465 (HPC59_05690) rny 1132062..1133633 (+) 1572 WP_005684479.1 ribonuclease Y -
  HPC59_RS05470 (HPC59_05695) - 1133722..1134378 (-) 657 WP_087942809.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44456.12 Da        Isoelectric Point: 7.2504

>NTDB_id=445649 HPC59_RS05455 WP_005713299.1 1128988..1130229(+) (cinA) [Lacticaseibacillus rhamnosus strain LV108]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=445649 HPC59_RS05455 WP_005713299.1 1128988..1130229(+) (cinA) [Lacticaseibacillus rhamnosus strain LV108]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCGGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAGGAAGTTTTGGAAAGTCGCGTGATGCGCTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCAGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7UHQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.019

100

0.53
  cinA Streptococcus mitis NCTC 12261

52.019

100

0.53
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae R6

51.069

100

0.521
  cinA Streptococcus pneumoniae Rx1

51.069

100

0.521
  cinA Streptococcus mutans UA159

51.442

100

0.518
  cinA Streptococcus pneumoniae D39

50.831

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

44.66

99.758

0.446
  cinA Streptococcus suis isolate S10

41.799

91.525

0.383