Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CK401_RS13770 Genome accession   NZ_CP053337
Coordinates   2955018..2956154 (+) Length   378 a.a.
NCBI ID   WP_021732545.1    Uniprot ID   -
Organism   Lactiplantibacillus paraplantarum strain CK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2950018..2961154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK401_RS13750 (CK401_02796) yfmH 2950584..2951885 (+) 1302 WP_021732549.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CK401_RS13755 (CK401_02797) - 2951989..2952861 (+) 873 WP_021732548.1 RodZ domain-containing protein -
  CK401_RS13760 (CK401_02798) pgsA 2952884..2953468 (+) 585 WP_021732547.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CK401_RS13765 (CK401_02799) cinA 2953664..2954926 (+) 1263 WP_056988393.1 competence/damage-inducible protein A Machinery gene
  CK401_RS13770 (CK401_02800) recA 2955018..2956154 (+) 1137 WP_021732545.1 recombinase RecA Machinery gene
  CK401_RS13775 (CK401_02801) rny 2956384..2957943 (+) 1560 WP_021732544.1 ribonuclease Y -
  CK401_RS13780 (CK401_02802) - 2958066..2958872 (+) 807 WP_021732543.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40554.86 Da        Isoelectric Point: 5.3715

>NTDB_id=444141 CK401_RS13770 WP_021732545.1 2955018..2956154(+) (recA) [Lactiplantibacillus paraplantarum strain CK401]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPIYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDIMTEIRQ
KVRDAYGMDQTGDEEATETNDQAKDKATAKSASKGQGKTPKAGPTETALELDDQPTEK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=444141 CK401_RS13770 WP_021732545.1 2955018..2956154(+) (recA) [Lactiplantibacillus paraplantarum strain CK401]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTAAAAAAGATCGAAAAGAACTTTGGTAAAGGGGCGATTATGCG
GATGGGTGATGCTGCCCAGACGACGATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGATGCGTTGGGTGTTGGCG
GCTACCCACGTGGCCGGATCGTAGAAATCTATGGTCCTGAAAGTTCAGGTAAAACGACCGTTGCGTTACACGCGGTGGCT
GAAGTTCAAAAGCAAGGTGGCACGGCAGCTTATATTGATGCTGAAAATGCCTTAGACCCTATTTATGCGGAACATTTGGG
GGTTAATATCGATGATCTATTGCTCTCGCAACCAGATACTGGTGAACAGGGGCTTGAAATCGCAGATGCCTTAGTTTCTA
GTGGTGCCGTTGATATTTTGGTTGTTGACTCAGTTGCGGCTTTAGTTCCACGGGCCGAAATTGAAGGTGAAATGGGTGAC
GCGCACGTTGGGTTACAAGCTCGACTCATGTCACAGGCATTACGAAAACTATCCGGAACGTTGAACAAGACTAAGACGAT
TGCATTATTTATTAATCAAATTCGTGAAAAAGTCGGGGTGATGTTTGGTAATCCCGAGACGACTCCGGGTGGTCGGGCGT
TGAAATTCTACGCAACAATTCGGTTGGAAGTTCGGCGGGCTGAACAAATTAAAGAGGGAACCAATATTATTGGTAACCGT
GTTCGAATCAAAGTTGTTAAAAACAAGGTGGCGCCACCATTTAAGCGAGCTGAAGTAGATATTATGTATGGTCATGGTAT
TTCACAAACTGGTGAAATTGTCGACATGGCTGCTGAAAAGGATATTGTGAAGAAGAGTGGTTCTTGGTATTCATACGGCG
ACGATCGGATTGGTCAAGGTCGTGAAAATGCGAAGAAATACCTGGACGAACATCCTGATATCATGACGGAAATTCGGCAA
AAGGTTCGGGACGCGTATGGCATGGACCAAACTGGTGATGAAGAAGCGACTGAAACTAATGATCAAGCTAAGGATAAGGC
CACAGCTAAGAGTGCTAGCAAGGGCCAAGGTAAGACACCCAAAGCGGGACCTACTGAGACAGCGCTAGAACTTGATGACC
AGCCAACCGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.529

89.947

0.751
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.831

0.656
  recA Streptococcus mutans UA159

63.66

99.735

0.635
  recA Streptococcus pneumoniae D39

66.572

93.386

0.622
  recA Streptococcus pneumoniae R6

66.572

93.386

0.622
  recA Streptococcus pneumoniae TIGR4

66.572

93.386

0.622
  recA Streptococcus pneumoniae Rx1

66.572

93.386

0.622
  recA Streptococcus mitis NCTC 12261

67.733

91.005

0.616
  recA Streptococcus mitis SK321

67.941

89.947

0.611
  recA Streptococcus pyogenes NZ131

68.882

87.566

0.603
  recA Lactococcus lactis subsp. cremoris KW2

68.902

86.772

0.598
  recA Ralstonia pseudosolanacearum GMI1000

61.584

90.212

0.556
  recA Acinetobacter baylyi ADP1

59.824

90.212

0.54
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Neisseria gonorrhoeae strain FA1090

61.515

87.302

0.537
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Pseudomonas stutzeri DSM 10701

62.848

85.45

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.979

0.532
  recA Vibrio cholerae strain A1552

61.728

85.714

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

85.714

0.529
  recA Acinetobacter baumannii D1279779

58.187

90.476

0.526
  recA Glaesserella parasuis strain SC1401

57.726

90.741

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.772

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.394

87.302

0.519
  recA Helicobacter pylori 26695

58.41

86.508

0.505
  recA Helicobacter pylori strain NCTC11637

58.41

86.508

0.505