Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CK401_RS13765 Genome accession   NZ_CP053337
Coordinates   2953664..2954926 (+) Length   420 a.a.
NCBI ID   WP_056988393.1    Uniprot ID   A0AAD0TPK0
Organism   Lactiplantibacillus paraplantarum strain CK401     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2948664..2959926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK401_RS13745 (CK401_02795) yfmF 2949322..2950587 (+) 1266 WP_021732550.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  CK401_RS13750 (CK401_02796) yfmH 2950584..2951885 (+) 1302 WP_021732549.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CK401_RS13755 (CK401_02797) - 2951989..2952861 (+) 873 WP_021732548.1 RodZ domain-containing protein -
  CK401_RS13760 (CK401_02798) pgsA 2952884..2953468 (+) 585 WP_021732547.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CK401_RS13765 (CK401_02799) cinA 2953664..2954926 (+) 1263 WP_056988393.1 competence/damage-inducible protein A Machinery gene
  CK401_RS13770 (CK401_02800) recA 2955018..2956154 (+) 1137 WP_021732545.1 recombinase RecA Machinery gene
  CK401_RS13775 (CK401_02801) rny 2956384..2957943 (+) 1560 WP_021732544.1 ribonuclease Y -
  CK401_RS13780 (CK401_02802) - 2958066..2958872 (+) 807 WP_021732543.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 44929.40 Da        Isoelectric Point: 6.9815

>NTDB_id=444140 CK401_RS13765 WP_056988393.1 2953664..2954926(+) (cinA) [Lactiplantibacillus paraplantarum strain CK401]
MQAEIIAVGTEILLGQITNTNSTYIAQGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAQYLNVALVESPSAMQKITAWFATNGKTMTANNRLQALYPDGAVPLTNHNGMAVGAFYQSVDSADFLLLPGPPRELTMM
FDTEAKPKLAAAYGRQAQIYSRVMRFYGISESELVTKLQPLIDGQTKVTIAPYAKTNEVTLRLSAQAVTERVAKTMIDTV
DQQIKACVGTFFYGYGDDNSLVTTVIKQMIAAKLSLTAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDTDGVVSKTTAQAMAVGAKKQLNTAVGVSFTGVAGPGTLEGQVAGTVWIGLAYRNQPVVAHQYHFAGNRQQIRERS
VMAGLDLLRHALNADMDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=444140 CK401_RS13765 WP_056988393.1 2953664..2954926(+) (cinA) [Lactiplantibacillus paraplantarum strain CK401]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGACAGATTACAAATACGAATAGTACTTATATCGCACA
AGGATTGGCTGAATTAGGAATTGATAGTTATTATCAGACGGTGGTCGGTGACAATCCGCAACGGTTATCGGCCGTGATTG
AAATTGCGGCCCAACGGAATGATCTCGTCATTTTGACGGGGGGACTAGGACCAACGAAAGATGATTTAACCAAACAGACC
CTCGCACAATATTTAAACGTGGCGTTGGTTGAGTCGCCATCAGCGATGCAAAAGATTACGGCTTGGTTTGCAACTAATGG
TAAGACAATGACTGCTAATAACCGGTTACAAGCATTATATCCTGATGGTGCGGTGCCGTTGACTAATCACAATGGGATGG
CGGTTGGGGCTTTTTATCAGTCTGTGGATAGTGCTGATTTCTTGTTGCTGCCGGGACCGCCCCGCGAATTGACTATGATG
TTTGATACTGAAGCTAAGCCGAAATTGGCCGCGGCATACGGGCGACAGGCACAAATTTATTCGCGAGTGATGCGCTTTTA
TGGTATCAGTGAGTCTGAACTGGTTACTAAGTTGCAGCCATTGATCGATGGCCAGACTAAAGTGACGATCGCACCGTATG
CCAAGACTAACGAGGTGACGTTACGCCTGAGTGCCCAAGCAGTGACTGAGAGGGTAGCCAAGACGATGATTGATACGGTG
GACCAGCAAATTAAAGCTTGTGTGGGGACCTTCTTTTACGGTTATGGTGATGATAATTCGTTAGTGACAACGGTTATTAA
GCAAATGATTGCGGCTAAGTTGAGTCTTACGGCTGCGGAAAGTTTAACGGCCGGACTATTTCAGAGCACGATCGGTAGTG
TATCCGGTGTCTCAGCAATCTTTCCGGGTGGCTTTGTCACGTATGCCAATGAAGCTAAGCATCAGTTAGTCAATGTGCCG
CAAGCAATTATTGATACCGATGGGGTAGTTTCTAAAACGACTGCTCAAGCCATGGCAGTGGGAGCCAAAAAACAATTAAA
TACTGCAGTGGGCGTGAGCTTTACTGGTGTTGCGGGGCCGGGGACACTTGAAGGTCAAGTTGCTGGGACCGTCTGGATCG
GCTTAGCCTATCGCAATCAACCCGTTGTTGCTCACCAGTATCATTTTGCTGGTAACCGGCAACAGATCCGTGAGCGCAGT
GTGATGGCTGGTTTAGACTTATTGCGGCATGCTTTAAACGCGGATATGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus mitis SK321

47.991

100

0.483
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.281

100

0.476
  cinA Streptococcus mutans UA159

44.893

100

0.45
  cinA Bacillus subtilis subsp. subtilis str. 168

45.946

96.905

0.445
  cinA Streptococcus suis isolate S10

38.462

99.048

0.381