Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HLK66_RS10120 Genome accession   NZ_CP053315
Coordinates   2141090..2142133 (+) Length   347 a.a.
NCBI ID   WP_095329247.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2136090..2147133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS10095 (HLK66_10105) - 2136521..2136778 (+) 258 WP_047940065.1 DUF3243 domain-containing protein -
  HLK66_RS10100 (HLK66_10110) - 2137178..2137969 (+) 792 WP_171509527.1 YmfK family protein -
  HLK66_RS10105 (HLK66_10115) - 2137991..2138875 (+) 885 WP_123259581.1 RodZ domain-containing protein -
  HLK66_RS10110 (HLK66_10120) pgsA 2138992..2139570 (+) 579 WP_095329245.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HLK66_RS10115 (HLK66_10125) cinA 2139672..2140913 (+) 1242 WP_123257483.1 competence/damage-inducible protein A Machinery gene
  HLK66_RS10120 (HLK66_10130) recA 2141090..2142133 (+) 1044 WP_095329247.1 recombinase RecA Machinery gene
  HLK66_RS10125 (HLK66_10135) rny 2142683..2144251 (+) 1569 WP_047940071.1 ribonuclease Y -
  HLK66_RS10130 (HLK66_10140) ltrA 2144834..2146096 (+) 1263 WP_171510276.1 group II intron reverse transcriptase/maturase -
  HLK66_RS10135 (HLK66_10145) - 2146279..2147076 (+) 798 WP_095329248.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37762.05 Da        Isoelectric Point: 5.0000

>NTDB_id=444066 HLK66_RS10120 WP_095329247.1 2141090..2142133(+) (recA) [Niallia circulans strain GN03]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQADRVISTSPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYNDERLGQGRENAKQFLKENPEMRLEIQKK
IRDHYGLDKEVTLKPENDENEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=444066 HLK66_RS10120 WP_095329247.1 2141090..2142133(+) (recA) [Niallia circulans strain GN03]
TTGAGTGATCGTCAAGCTGCATTAGAAATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTAGTATCATGAAGCT
GGGAGAGCAAGCAGATAGAGTCATTTCTACTAGTCCAAGTGGATCTTTAGCTTTAGATGCAGCCCTAGGTGTTGGTGGAT
ATCCAAGAGGTCGTATTGTAGAAATTTATGGTCCTGAAAGTTCAGGGAAAACAACAGTAGCGCTTCATGCTATTGCTGAG
GTTCAGGCAAATGGCGGACAAGCAGCATTTATTGATGCAGAGCATGCATTGGATCCAGTTTATGCCCAAAAGCTTGGCGT
TAATATTGATGAATTATTACTTTCTCAACCAGATACCGGAGAACAAGCATTAGAAATCGCGGAAGCATTAGTACGAAGTG
GTGCAGTTGATATTTTAGTTATTGACTCTGTAGCAGCACTTGTACCAAAAGCAGAAATTGAAGGCGAAATGGGAGATTCT
CACGTTGGACTTCAAGCTCGTTTAATGTCACAGGCACTTCGCAAGTTATCTGGTGCTATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTAATGTTCGGAAATCCTGAGACAACTCCTGGTGGACGTGCGCTAA
AATTCTATTCATCTGTCCGACTAGAAGTTCGTCGTGCTGAAACGTTAAAACAAGGAACAGATATGGTAGGAAACAAAACA
AAAATCAAAGTGGTAAAAAATAAAGTAGCACCACCTTTCAAAGTAGCAGAAGTCGATATCATGTATGGTGAAGGTATCTC
AAAAGAAGGAGAAATCATTGACCTTGGTTCTGAACTTGATATTGTTCAAAAAAGTGGTGCTTGGTATTCTTACAATGACG
AAAGATTAGGGCAAGGCCGTGAAAATGCGAAGCAATTCTTGAAAGAAAATCCAGAAATGCGCCTAGAAATTCAAAAGAAA
ATTCGCGATCATTACGGGCTGGATAAAGAAGTTACATTAAAGCCTGAAAATGATGAGAATGAACAATTTGAATTAATCGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.524

0.847
  recA Latilactobacillus sakei subsp. sakei 23K

73.563

100

0.738
  recA Streptococcus mitis SK321

67.236

100

0.68
  recA Streptococcus mitis NCTC 12261

67.236

100

0.68
  recA Streptococcus mutans UA159

66.197

100

0.677
  recA Streptococcus pneumoniae R6

67.723

100

0.677
  recA Streptococcus pneumoniae TIGR4

67.723

100

0.677
  recA Streptococcus pneumoniae Rx1

67.723

100

0.677
  recA Streptococcus pneumoniae D39

67.723

100

0.677
  recA Lactococcus lactis subsp. cremoris KW2

68.452

96.83

0.663
  recA Streptococcus pyogenes NZ131

69.207

94.524

0.654
  recA Ralstonia pseudosolanacearum GMI1000

66.768

94.524

0.631
  recA Vibrio cholerae strain A1552

65.075

96.542

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.075

96.542

0.628
  recA Neisseria gonorrhoeae MS11

65.861

95.389

0.628
  recA Neisseria gonorrhoeae MS11

65.861

95.389

0.628
  recA Neisseria gonorrhoeae strain FA1090

65.861

95.389

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.757

98.271

0.617
  recA Helicobacter pylori 26695

62.687

96.542

0.605
  recA Helicobacter pylori strain NCTC11637

62.687

96.542

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

94.236

0.605
  recA Glaesserella parasuis strain SC1401

61.111

98.559

0.602
  recA Acinetobacter baylyi ADP1

60.294

97.983

0.591
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Acinetobacter baumannii D1279779

62.112

92.795

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.219

0.573