Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HLK66_RS10115 Genome accession   NZ_CP053315
Coordinates   2139672..2140913 (+) Length   413 a.a.
NCBI ID   WP_123257483.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2134672..2145913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS10090 (HLK66_10100) - 2135704..2136426 (+) 723 WP_123257481.1 SDR family oxidoreductase -
  HLK66_RS10095 (HLK66_10105) - 2136521..2136778 (+) 258 WP_047940065.1 DUF3243 domain-containing protein -
  HLK66_RS10100 (HLK66_10110) - 2137178..2137969 (+) 792 WP_171509527.1 YmfK family protein -
  HLK66_RS10105 (HLK66_10115) - 2137991..2138875 (+) 885 WP_123259581.1 RodZ domain-containing protein -
  HLK66_RS10110 (HLK66_10120) pgsA 2138992..2139570 (+) 579 WP_095329245.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HLK66_RS10115 (HLK66_10125) cinA 2139672..2140913 (+) 1242 WP_123257483.1 competence/damage-inducible protein A Machinery gene
  HLK66_RS10120 (HLK66_10130) recA 2141090..2142133 (+) 1044 WP_095329247.1 recombinase RecA Machinery gene
  HLK66_RS10125 (HLK66_10135) rny 2142683..2144251 (+) 1569 WP_047940071.1 ribonuclease Y -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45237.06 Da        Isoelectric Point: 5.7145

>NTDB_id=444065 HLK66_RS10115 WP_123257483.1 2139672..2140913(+) (cinA) [Niallia circulans strain GN03]
MNAEIIAVGSELLLGQIANTNAQFISKHLADLGVNVYYHTVVGDNAARLEEAIKVAESRAQLLIFSGGLGPTKDDLTKET
IAKHIGKELVFDKTALDSIEDYFVKTKRTMTENNKKQALVLEGSDVLPNDHGMAPGMFLKKDSRFYMLLPGPPKEIQPMF
VKYGFPAIQKQMTSKDVIVSRVLRFFGIGESLLETKIEDLIDAQTNPTIAPLAGDGEVTLRITCKHDSIEEADKLIVKTE
EEIFARVGEFFYGYEDTTLMNELSHILLKKNLTLAAAESLTGGLFQQEITGIPGAGNIFKGGIVCYTNEVKHQILQVKES
TIKEHGVVSEQCAKELAENVARLLKADIGISFTGVAGPNELEGNPVGTVYIGIAKSGEPTKVEKLALSGTRAGNRVRSVR
YGQYFLLKMLEDK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=444065 HLK66_RS10115 WP_123257483.1 2139672..2140913(+) (cinA) [Niallia circulans strain GN03]
ATGAATGCAGAGATTATTGCTGTTGGCTCAGAATTATTACTTGGACAAATTGCTAATACAAATGCTCAATTTATATCCAA
GCATTTAGCCGACTTAGGAGTAAATGTTTATTATCATACAGTTGTTGGAGATAATGCAGCTCGCTTAGAGGAAGCAATAA
AAGTCGCTGAAAGCCGAGCACAATTGCTTATTTTCTCCGGTGGATTAGGTCCAACAAAGGACGATTTAACGAAAGAAACG
ATTGCCAAGCATATAGGGAAAGAGTTGGTTTTTGATAAAACAGCTTTAGATTCCATTGAAGACTATTTTGTCAAAACGAA
ACGCACGATGACGGAAAATAATAAAAAGCAAGCATTAGTATTAGAAGGAAGCGACGTTCTTCCAAATGACCATGGTATGG
CACCGGGGATGTTTTTAAAAAAAGACAGTCGCTTTTACATGCTTTTACCAGGACCACCGAAAGAAATTCAGCCAATGTTT
GTTAAATATGGATTTCCTGCAATACAAAAGCAAATGACAAGCAAAGATGTCATTGTTTCACGCGTGCTTCGCTTCTTTGG
CATTGGGGAGTCCCTGCTAGAAACAAAAATAGAAGATTTAATTGATGCCCAGACCAATCCGACTATTGCCCCGCTCGCAG
GAGATGGAGAGGTAACATTACGTATCACATGTAAGCATGATTCTATAGAAGAAGCAGATAAATTGATTGTAAAAACAGAA
GAAGAAATATTCGCACGTGTAGGAGAATTTTTCTATGGGTATGAGGACACTACTTTAATGAATGAGCTTTCTCATATTTT
ATTAAAGAAAAATTTAACATTAGCAGCCGCAGAGAGTCTGACAGGAGGACTGTTTCAGCAAGAGATAACAGGAATTCCAG
GCGCTGGGAATATTTTTAAAGGCGGAATTGTTTGCTATACAAATGAAGTAAAGCATCAAATCTTGCAAGTAAAAGAGTCG
ACGATCAAAGAACATGGTGTCGTAAGCGAGCAATGTGCGAAAGAACTTGCGGAGAATGTTGCACGTCTATTAAAAGCTGA
CATTGGGATAAGCTTCACAGGAGTTGCAGGTCCAAATGAATTAGAAGGAAACCCAGTAGGTACCGTTTATATTGGGATTG
CTAAAAGCGGTGAACCGACAAAAGTAGAGAAGTTAGCATTAAGTGGAACAAGAGCTGGTAATCGAGTTAGAAGTGTGAGA
TACGGTCAATATTTCTTATTGAAAATGTTAGAAGATAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.097

99.516

0.598
  cinA Streptococcus mitis SK321

47.143

100

0.479
  cinA Streptococcus pneumoniae TIGR4

46.667

100

0.475
  cinA Streptococcus mitis NCTC 12261

46.429

100

0.472
  cinA Streptococcus pneumoniae Rx1

46.19

100

0.47
  cinA Streptococcus pneumoniae R6

46.19

100

0.47
  cinA Streptococcus pneumoniae D39

45.952

100

0.467
  cinA Streptococcus mutans UA159

46.305

98.305

0.455
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38