Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | O3Y_RS02855 | Genome accession | NC_016944 |
| Coordinates | 574359..575423 (+) | Length | 354 a.a. |
| NCBI ID | WP_000344154.1 | Uniprot ID | A0A0K9UMZ1 |
| Organism | Vibrio cholerae IEC224 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 520644..576014 | 574359..575423 | within | 0 |
Gene organization within MGE regions
Location: 520644..576014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O3Y_RS02580 | - | 520644..522404 (-) | 1761 | Protein_451 | GNAT family N-acyltransferase | - |
| O3Y_RS02590 (O3Y_02290) | - | 523164..525125 (-) | 1962 | WP_000466016.1 | DUF3732 domain-containing protein | - |
| O3Y_RS02595 (O3Y_02295) | - | 525126..525638 (-) | 513 | WP_000917213.1 | three component ABC system middle component | - |
| O3Y_RS02600 (O3Y_02300) | - | 525631..526797 (-) | 1167 | WP_000654528.1 | ABC-three component system protein | - |
| O3Y_RS02605 (O3Y_02305) | - | 527053..527928 (-) | 876 | WP_001139148.1 | MarR family transcriptional regulator | - |
| O3Y_RS02610 (O3Y_02310) | - | 528313..528957 (+) | 645 | WP_000042053.1 | inovirus Gp2 family protein | - |
| O3Y_RS02615 (O3Y_02315) | - | 529019..529693 (+) | 675 | WP_000149629.1 | inovirus Gp2 family protein | - |
| O3Y_RS02620 (O3Y_02320) | - | 529747..530346 (+) | 600 | WP_001883316.1 | inovirus-type Gp2 protein | - |
| O3Y_RS02625 (O3Y_02325) | - | 530410..530610 (+) | 201 | WP_001211742.1 | AlpA family transcriptional regulator | - |
| O3Y_RS02630 (O3Y_02330) | - | 530692..531132 (+) | 441 | WP_000122383.1 | ribonuclease HI | - |
| O3Y_RS19220 | - | 531213..532404 (-) | 1192 | Protein_461 | IS3 family transposase | - |
| O3Y_RS20675 | - | 532621..532813 (+) | 193 | Protein_462 | RNase H family protein | - |
| O3Y_RS02645 | - | 532907..533817 (-) | 911 | Protein_463 | IS5-like element ISVch8 family transposase | - |
| O3Y_RS02650 (O3Y_02365) | - | 534206..534730 (-) | 525 | WP_000042161.1 | type II secretion system protein | - |
| O3Y_RS19225 | - | 535004..535228 (-) | 225 | WP_306461095.1 | high-affinity zinc uptake system protein ZnuA precursor | - |
| O3Y_RS02655 (O3Y_02370) | - | 535426..536706 (+) | 1281 | WP_001883323.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| O3Y_RS02660 (O3Y_02375) | - | 536884..537111 (-) | 228 | WP_000749780.1 | hypothetical protein | - |
| O3Y_RS02665 (O3Y_02380) | - | 537159..537527 (-) | 369 | WP_000176666.1 | hypothetical protein | - |
| O3Y_RS02670 (O3Y_02385) | - | 537558..538292 (-) | 735 | WP_000066832.1 | WYL domain-containing protein | - |
| O3Y_RS02680 (O3Y_02390) | - | 538611..539054 (-) | 444 | WP_000041085.1 | DUF2787 domain-containing protein | - |
| O3Y_RS02685 (O3Y_02395) | - | 539104..539541 (-) | 438 | WP_000572499.1 | DUF2787 domain-containing protein | - |
| O3Y_RS02690 (O3Y_02400) | radC | 539538..540011 (-) | 474 | WP_001068472.1 | DNA repair protein RadC | - |
| O3Y_RS02695 (O3Y_02405) | - | 540323..542134 (+) | 1812 | WP_000110139.1 | DUF262 domain-containing protein | - |
| O3Y_RS02700 (O3Y_02410) | - | 542134..544599 (+) | 2466 | WP_000434811.1 | DUF262 domain-containing protein | - |
| O3Y_RS02705 (O3Y_02415) | - | 544966..546921 (+) | 1956 | WP_001143868.1 | hypothetical protein | - |
| O3Y_RS02715 (O3Y_02425) | - | 547228..548405 (+) | 1178 | WP_100068541.1 | IS3 family transposase | - |
| O3Y_RS02720 (O3Y_02430) | - | 548441..549682 (-) | 1242 | WP_001129565.1 | integrase domain-containing protein | - |
| O3Y_RS02730 (O3Y_02435) | rpoD | 550068..551945 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| O3Y_RS02735 (O3Y_02440) | dnaG | 552044..553807 (-) | 1764 | WP_000907210.1 | DNA primase | - |
| O3Y_RS02740 (O3Y_02445) | - | 553897..554340 (-) | 444 | WP_001173892.1 | GatB/YqeY domain-containing protein | - |
| O3Y_RS02745 (O3Y_02450) | rpsU | 554370..554585 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| O3Y_RS02750 (O3Y_02455) | tsaD | 554826..555845 (+) | 1020 | WP_001220122.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| O3Y_RS02755 (O3Y_02460) | - | 555999..556811 (+) | 813 | WP_001087495.1 | alpha/beta fold hydrolase | - |
| O3Y_RS02760 (O3Y_02465) | plsY | 556860..557486 (-) | 627 | WP_000188027.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| O3Y_RS02765 (O3Y_02475) | folB | 557675..558028 (+) | 354 | WP_000361954.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| O3Y_RS02770 (O3Y_02480) | folK | 558025..558531 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| O3Y_RS02775 (O3Y_02485) | - | 558528..559331 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| O3Y_RS02780 (O3Y_02490) | ftsB | 559446..559730 (+) | 285 | WP_001263189.1 | cell division protein FtsB | - |
| O3Y_RS02785 (O3Y_02495) | ispD | 559727..560425 (+) | 699 | WP_001061951.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| O3Y_RS02790 (O3Y_02500) | ispF | 560422..560898 (+) | 477 | WP_000619209.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| O3Y_RS02795 (O3Y_02505) | truD | 560928..562013 (+) | 1086 | WP_000129752.1 | tRNA pseudouridine(13) synthase TruD | - |
| O3Y_RS02800 (O3Y_02510) | surE | 562015..562767 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| O3Y_RS02805 (O3Y_02515) | - | 562760..563386 (+) | 627 | WP_000002982.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| O3Y_RS02810 (O3Y_02520) | nlpD | 563386..564321 (+) | 936 | WP_000177568.1 | murein hydrolase activator NlpD | - |
| O3Y_RS02815 (O3Y_02525) | rpoS | 564395..565402 (+) | 1008 | WP_000116737.1 | RNA polymerase sigma factor RpoS | Regulator |
| O3Y_RS02820 (O3Y_02530) | mutS | 565495..568083 (-) | 2589 | WP_001894770.1 | DNA mismatch repair protein MutS | - |
| O3Y_RS02825 (O3Y_02535) | cysM | 568351..569238 (-) | 888 | WP_001279365.1 | cysteine synthase CysM | - |
| O3Y_RS02830 (O3Y_02540) | cysP | 569622..570623 (+) | 1002 | WP_001079835.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| O3Y_RS02835 (O3Y_02545) | cysT | 570700..571551 (+) | 852 | WP_000531810.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| O3Y_RS02840 (O3Y_02550) | cysW | 571562..572425 (+) | 864 | WP_000951362.1 | sulfate ABC transporter permease subunit CysW | - |
| O3Y_RS02845 (O3Y_02555) | - | 572422..573552 (+) | 1131 | WP_000027776.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| O3Y_RS02850 (O3Y_02560) | pncC | 573719..574225 (+) | 507 | WP_000853811.1 | nicotinamide-nucleotide amidase | - |
| O3Y_RS02855 (O3Y_02565) | recA | 574359..575423 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| O3Y_RS02860 (O3Y_02570) | recX | 575556..576014 (+) | 459 | WP_000006855.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38249.92 Da Isoelectric Point: 5.0766
>NTDB_id=44194 O3Y_RS02855 WP_000344154.1 574359..575423(+) (recA) [Vibrio cholerae IEC224]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
Nucleotide
Download Length: 1065 bp
>NTDB_id=44194 O3Y_RS02855 WP_000344154.1 574359..575423(+) (recA) [Vibrio cholerae IEC224]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GTCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTGGATCCGGTTTATGCCAAAAAATTGGG
CGTGAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCTGTGGATGTCATCGTTGTTGACTCAGTAGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAGAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GTCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTGGATCCGGTTTATGCCAAAAAATTGGG
CGTGAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCTGTGGATGTCATCGTTGTTGACTCAGTAGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAGAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.