Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HF394_RS19065 Genome accession   NZ_CP051177
Coordinates   3880061..3881119 (-) Length   352 a.a.
NCBI ID   WP_053166457.1    Uniprot ID   A0A7H8QG98
Organism   Planococcus glaciei strain CNCTC7660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3875061..3886119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS19045 (HF394_19055) - 3875221..3875649 (-) 429 WP_036806560.1 RicAFT regulatory complex protein RicA family protein -
  HF394_RS19050 (HF394_19060) miaB 3875654..3877198 (-) 1545 WP_176295098.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  HF394_RS19055 (HF394_19065) - 3877298..3878095 (-) 798 WP_176295099.1 TIGR00282 family metallophosphoesterase -
  HF394_RS19060 (HF394_19070) rny 3878163..3879722 (-) 1560 WP_036806568.1 ribonuclease Y -
  HF394_RS19065 (HF394_19075) recA 3880061..3881119 (-) 1059 WP_053166457.1 recombinase RecA Machinery gene
  HF394_RS19070 (HF394_19080) cinA 3881294..3882547 (-) 1254 WP_036806574.1 competence/damage-inducible protein A Machinery gene
  HF394_RS19075 (HF394_19085) pgsA 3882577..3883155 (-) 579 WP_074509497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HF394_RS19080 (HF394_19090) - 3883204..3884067 (-) 864 WP_176295100.1 helix-turn-helix domain-containing protein -
  HF394_RS19085 (HF394_19095) - 3884085..3884882 (-) 798 WP_036806583.1 YmfK family protein -
  HF394_RS19090 (HF394_19100) - 3885076..3885795 (-) 720 WP_036806586.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38126.36 Da        Isoelectric Point: 4.8988

>NTDB_id=436653 HF394_RS19065 WP_053166457.1 3880061..3881119(-) (recA) [Planococcus glaciei strain CNCTC7660]
MSDRKAALDMALKSIEKQFGKGSVMKLGEKSDRNVSSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQAIGGTAAFIDAEHALDPMYAKALGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINTSNTIFIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTDIIGNRT
KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSELDIIQKSGSWYSYNEERIGQGRENAKQFLLNNPEMRNEISNK
IRESFGMAAANYTIAANKDEPEEFNLLIDDEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=436653 HF394_RS19065 WP_053166457.1 3880061..3881119(-) (recA) [Planococcus glaciei strain CNCTC7660]
TTGAGCGACCGTAAAGCAGCGTTAGACATGGCGTTAAAGAGTATAGAAAAGCAATTTGGTAAAGGTTCGGTCATGAAATT
AGGCGAGAAAAGCGACCGTAACGTATCATCGGTTTCAAGTGGTTCATTGGCCCTTGACACTGCACTGGGAATAGGCGGAT
ATCCGCGTGGACGGGTAATCGAAATCTACGGCCCTGAAAGTTCAGGTAAAACGACTGTCTCGCTTCATGCAATCGCAGAA
GTACAAGCAATCGGCGGCACAGCAGCATTCATCGATGCTGAACACGCGTTAGATCCGATGTACGCCAAAGCATTAGGCGT
TAACATTGATGAGCTGCTCTTGTCTCAGCCGGATACAGGCGAACAGGCACTTGAAATTGCGGAAGCTTTGGTACGAAGCG
GCGCTATCGATATCGTAGTTGTCGATTCTGTAGCGGCACTTGTGCCAAAAGCGGAAATTGAAGGCGAAATGGGCGACTCC
CATATGGGTCTGCAAGCCCGTTTGATGTCCCAGGCGCTTCGCAAACTTTCAGGCGTCATCAACACATCAAACACCATTTT
TATCTTCATCAACCAGATCCGCGAAAAAATCGGTGTAATGTTTGGGAATCCGGAAACAACTCCGGGCGGCCGGGCATTGA
AATTCTATTCATCTGTCCGTTTGGAAGTAAGACGTGCAGAAGCATTGAAATCCGGCACGGATATTATCGGTAACAGAACA
AAGATCAAGATTGTAAAAAATAAGGTAGCACCGCCGTTCCGTACAGCTGAAGTGGATATTATGTACGGAAAAGGGATTTC
CCGTGAAGGTGAAATTGTGGATATCGGTTCTGAACTGGATATCATCCAGAAGAGCGGTTCTTGGTATTCTTACAACGAAG
AACGCATTGGACAAGGACGCGAAAACGCGAAGCAGTTCCTTCTTAACAATCCGGAAATGCGCAATGAAATTTCCAACAAA
ATCCGCGAATCTTTTGGTATGGCAGCAGCCAACTACACAATTGCAGCCAATAAAGATGAACCGGAAGAATTTAACTTGCT
TATTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8QG98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.898

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

71.92

99.148

0.713
  recA Streptococcus pneumoniae Rx1

63.288

100

0.656
  recA Streptococcus pneumoniae D39

63.288

100

0.656
  recA Streptococcus pneumoniae TIGR4

63.288

100

0.656
  recA Streptococcus pneumoniae R6

63.288

100

0.656
  recA Streptococcus mitis SK321

63.989

100

0.656
  recA Streptococcus mitis NCTC 12261

63.989

100

0.656
  recA Streptococcus mutans UA159

68.06

95.17

0.648
  recA Streptococcus pyogenes NZ131

69.512

93.182

0.648
  recA Acinetobacter baylyi ADP1

63.218

98.864

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.75

0.616
  recA Helicobacter pylori strain NCTC11637

62.573

97.159

0.608
  recA Helicobacter pylori 26695

62.573

97.159

0.608
  recA Neisseria gonorrhoeae MS11

65.741

92.045

0.605
  recA Neisseria gonorrhoeae MS11

65.741

92.045

0.605
  recA Neisseria gonorrhoeae strain FA1090

65.741

92.045

0.605
  recA Acinetobacter baumannii D1279779

61.383

98.58

0.605
  recA Ralstonia pseudosolanacearum GMI1000

67.732

88.92

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

93.75

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.614

0.588
  recA Pseudomonas stutzeri DSM 10701

62.614

93.466

0.585
  recA Glaesserella parasuis strain SC1401

63.975

91.477

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

91.193

0.585
  recA Vibrio cholerae strain A1552

64.174

91.193

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568