Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HF394_RS19070 Genome accession   NZ_CP051177
Coordinates   3881294..3882547 (-) Length   417 a.a.
NCBI ID   WP_036806574.1    Uniprot ID   A0A7H8QEZ3
Organism   Planococcus glaciei strain CNCTC7660     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3876294..3887547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS19055 (HF394_19065) - 3877298..3878095 (-) 798 WP_176295099.1 TIGR00282 family metallophosphoesterase -
  HF394_RS19060 (HF394_19070) rny 3878163..3879722 (-) 1560 WP_036806568.1 ribonuclease Y -
  HF394_RS19065 (HF394_19075) recA 3880061..3881119 (-) 1059 WP_053166457.1 recombinase RecA Machinery gene
  HF394_RS19070 (HF394_19080) cinA 3881294..3882547 (-) 1254 WP_036806574.1 competence/damage-inducible protein A Machinery gene
  HF394_RS19075 (HF394_19085) pgsA 3882577..3883155 (-) 579 WP_074509497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HF394_RS19080 (HF394_19090) - 3883204..3884067 (-) 864 WP_176295100.1 helix-turn-helix domain-containing protein -
  HF394_RS19085 (HF394_19095) - 3884085..3884882 (-) 798 WP_036806583.1 YmfK family protein -
  HF394_RS19090 (HF394_19100) - 3885076..3885795 (-) 720 WP_036806586.1 SDR family oxidoreductase -
  HF394_RS19095 (HF394_19105) - 3885792..3887093 (-) 1302 WP_139150507.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45356.64 Da        Isoelectric Point: 4.6371

>NTDB_id=436654 HF394_RS19070 WP_036806574.1 3881294..3882547(-) (cinA) [Planococcus glaciei strain CNCTC7660]
MNAEIIAVGSELLLGQITNSNARFLSSHLAELGINVYYHTVVGDNAGRLEDVIQIAEERADLIIFTGGLGPTKDDLTKET
IARHLGTTLEMNEEALESIVAFFERAGRVMTENNKKQALVLKGSEVLANHHGMAPGMLYKTEERAYILLPGPPKEMEPMF
QFEAKPKLARLLNQADVILSHVLRFYGIGEAELEDRLQDLLDRQTNPTIAPLASDGEVMLRLTAKTNSEEQAWELINEAK
TEILDRVGQYLYGYDNDSLASKTIELLKEQSKTISAAESLTAGLFQSELAAVAGASAVLTGGVIAYNEEMKIEQLGIAPE
LLKEYGVVSEETAIAMAEAVRRKFGTDIAVGLTGAAGPDAHGDQPAGTVWIGIATEDGTTAYRLQLSGMRNTNRLRAVKL
ALSYIIRTLTDGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=436654 HF394_RS19070 WP_036806574.1 3881294..3882547(-) (cinA) [Planococcus glaciei strain CNCTC7660]
ATGAATGCAGAAATTATTGCAGTAGGCTCTGAACTGCTGCTTGGACAAATCACCAACTCGAATGCCCGTTTTTTATCCAG
CCATCTGGCTGAGCTTGGCATCAATGTGTATTACCATACAGTGGTCGGAGACAATGCGGGGCGTTTGGAAGACGTGATCC
AGATCGCAGAAGAACGCGCCGATTTGATCATTTTTACAGGCGGACTTGGCCCGACGAAAGACGATTTGACTAAGGAAACG
ATTGCCCGCCATTTGGGCACAACGCTCGAAATGAATGAGGAAGCGCTTGAGTCAATCGTCGCGTTTTTTGAACGCGCCGG
ACGCGTCATGACCGAGAACAACAAAAAACAGGCGCTTGTTCTAAAGGGAAGCGAAGTACTGGCCAATCACCACGGCATGG
CTCCCGGGATGCTTTACAAAACGGAGGAACGGGCGTACATCCTCTTGCCGGGCCCGCCAAAGGAAATGGAGCCGATGTTC
CAGTTTGAAGCAAAACCGAAACTGGCCCGCCTTTTAAATCAAGCGGATGTTATTTTGTCCCACGTGCTGCGGTTTTACGG
CATTGGAGAAGCGGAGCTTGAAGACCGCCTCCAGGACCTTTTGGACCGGCAAACCAATCCGACCATTGCGCCGCTTGCAT
CAGACGGAGAAGTCATGCTTCGGCTTACAGCGAAGACAAACTCGGAAGAGCAGGCATGGGAATTGATCAACGAGGCAAAA
ACGGAAATTTTGGACCGGGTCGGGCAATATTTGTATGGCTACGACAATGATTCCCTGGCTTCGAAGACAATTGAACTCCT
GAAAGAACAGTCCAAGACCATTTCCGCTGCCGAAAGCCTGACAGCCGGCTTGTTCCAATCGGAACTGGCTGCAGTAGCGG
GCGCAAGTGCGGTTCTTACAGGCGGCGTGATTGCTTACAATGAAGAAATGAAAATCGAACAGTTGGGGATAGCGCCTGAA
CTGCTGAAAGAATACGGCGTTGTCAGCGAAGAAACCGCTATTGCAATGGCAGAAGCGGTGCGCCGGAAGTTTGGTACGGA
TATTGCGGTCGGTTTGACTGGAGCTGCAGGACCGGATGCGCACGGCGACCAGCCGGCGGGAACGGTATGGATCGGCATTG
CCACAGAAGACGGCACCACGGCTTACCGTCTTCAGTTATCGGGGATGCGCAACACGAACCGGTTGCGAGCGGTAAAATTA
GCTTTGTCTTATATCATACGAACACTGACAGATGGAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8QEZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.317

97.602

0.52
  cinA Streptococcus mutans UA159

46.377

99.281

0.46
  cinA Streptococcus mitis SK321

45.823

100

0.46
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.458
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.451
  cinA Streptococcus pneumoniae Rx1

44.63

100

0.448
  cinA Streptococcus pneumoniae R6

44.63

100

0.448
  cinA Streptococcus pneumoniae D39

44.391

100

0.446
  cinA Streptococcus suis isolate S10

40.306

94.005

0.379