Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HB764_RS12950 Genome accession   NZ_CP050478
Coordinates   2763345..2764388 (-) Length   347 a.a.
NCBI ID   WP_255957080.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2758345..2769388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS12935 (HB764_12820) - 2758542..2759729 (-) 1188 WP_255957078.1 aspartate kinase -
  HB764_RS12940 (HB764_12825) alaS 2759932..2762529 (-) 2598 WP_255957079.1 alanine--tRNA ligase -
  HB764_RS12945 (HB764_12830) recX 2762672..2763139 (-) 468 WP_005425358.1 recombination regulator RecX -
  HB764_RS12950 (HB764_12835) recA 2763345..2764388 (-) 1044 WP_255957080.1 recombinase RecA Machinery gene
  HB764_RS12955 (HB764_12840) pncC 2764589..2765071 (-) 483 WP_005531683.1 nicotinamide-nucleotide amidase -
  HB764_RS12960 (HB764_12845) mutS 2765157..2767718 (+) 2562 WP_255957081.1 DNA mismatch repair protein MutS -
  HB764_RS12965 (HB764_12850) rpoS 2767808..2768794 (-) 987 WP_255957082.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37419.84 Da        Isoelectric Point: 4.8875

>NTDB_id=433212 HB764_RS12950 WP_255957080.1 2763345..2764388(-) (recA) [Vibrio campbellii strain LJC011]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPETGKTIDA
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=433212 HB764_RS12950 WP_255957080.1 2763345..2764388(-) (recA) [Vibrio campbellii strain LJC011]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATTTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATTGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGACGCAGAGCACGCGCTAGACCCTGTATACGCGATGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCAGACACTGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGACTCAGTAGCAGCACTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACGGGTAACCTAAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACACGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCGAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGCGAAGGCGAACTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCGGGTGCATGGTACAGCTACCAAG
GTGACAAGATCGGCCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAACCGGTAAGACTATCGATGCT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAGCACCAGAATCGGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

94.833

94.813

0.899
  recA Vibrio cholerae O1 biovar El Tor strain E7946

94.833

94.813

0.899
  recA Acinetobacter baylyi ADP1

72.543

99.712

0.723
  recA Pseudomonas stutzeri DSM 10701

75.535

94.236

0.712
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.552

93.948

0.663
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.948

0.646
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.588

97.983

0.594
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus pneumoniae TIGR4

62.229

93.084

0.579
  recA Streptococcus pneumoniae Rx1

62.229

93.084

0.579
  recA Streptococcus pneumoniae D39

62.229

93.084

0.579
  recA Streptococcus pneumoniae R6

62.229

93.084

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

91.931

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Streptococcus mutans UA159

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.821

89.914

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.084

0.556