Detailed information NTG0433214

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB764_RS12965
• Genome accession: NZ_CP050478
• Coordinates: 2767808..2768794 (-)
• Length: 328 a.a.
• NCBI ID: WP_255957082.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC011
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2762808..2773794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB764_RS12950 (HB764_12835)	recA	2763345..2764388 (-)	1044	WP_255957080.1	recombinase RecA	Machinery gene
HB764_RS12955 (HB764_12840)	pncC	2764589..2765071 (-)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
HB764_RS12960 (HB764_12845)	mutS	2765157..2767718 (+)	2562	WP_255957081.1	DNA mismatch repair protein MutS	-
HB764_RS12965 (HB764_12850)	rpoS	2767808..2768794 (-)	987	WP_255957082.1	RNA polymerase sigma factor RpoS	Regulator
HB764_RS12970 (HB764_12855)	-	2768875..2769798 (-)	924	WP_255957083.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB764_RS12975 (HB764_12860)	-	2769813..2770439 (-)	627	WP_255957084.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB764_RS12980 (HB764_12865)	surE	2770439..2771215 (-)	777	WP_255957085.1	5'/3'-nucleotidase SurE	-
HB764_RS12985 (HB764_12870)	truD	2771215..2772258 (-)	1044	WP_255957086.1	tRNA pseudouridine(13) synthase TruD	-
HB764_RS12990 (HB764_12875)	ispF	2772304..2772780 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB764_RS12995 (HB764_12880)	ispD	2772795..2773505 (-)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HB764_RS13000 (HB764_12885)	ftsB	2773507..2773788 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37554.47 Da
• Isoelectric Point: 4.7331

>NTDB_id=433214 HB764_RS12965 WP_255957082.1 2767808..2768794(-) (rpoS) [Vibrio campbellii strain LJC011]
MSISNTVTKVEEFEYDNASTEGISNNELEKTSNRTKTVAREEFDVSSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=433214 HB764_RS12965 WP_255957082.1 2767808..2768794(-) (rpoS) [Vibrio campbellii strain LJC011]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTTCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGTGGCACGCGAAGAATTCGACGTGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATTGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.582	100	0.854