Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G8O30_RS05260 Genome accession   NZ_CP049742
Coordinates   1039292..1040338 (+) Length   348 a.a.
NCBI ID   WP_275576525.1    Uniprot ID   A0A7S8CAJ5
Organism   Mangrovibacillus cuniculi strain R1DC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034292..1045338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O30_RS05235 (G8O30_05225) - 1034871..1035131 (+) 261 WP_239673931.1 DUF3243 domain-containing protein -
  G8O30_RS05240 (G8O30_05230) - 1035305..1036096 (+) 792 WP_239673932.1 YmfK family protein -
  G8O30_RS05245 (G8O30_05235) - 1036115..1037002 (+) 888 WP_239673933.1 helix-turn-helix domain-containing protein -
  G8O30_RS05250 (G8O30_05240) pgsA 1037034..1037621 (+) 588 WP_239673934.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G8O30_RS05255 (G8O30_05245) cinA 1037637..1038881 (+) 1245 WP_239673935.1 competence/damage-inducible protein A Machinery gene
  G8O30_RS05260 (G8O30_05250) recA 1039292..1040338 (+) 1047 WP_275576525.1 recombinase RecA Machinery gene
  G8O30_RS05265 (G8O30_05255) rny 1040621..1042186 (+) 1566 WP_239673936.1 ribonuclease Y -
  G8O30_RS05270 (G8O30_05260) - 1042405..1043208 (+) 804 WP_239673937.1 TIGR00282 family metallophosphoesterase -
  G8O30_RS05275 (G8O30_05265) - 1043343..1043606 (+) 264 WP_239673938.1 stage V sporulation protein S -
  G8O30_RS05280 (G8O30_05270) - 1043810..1044736 (+) 927 WP_239673939.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38137.33 Da        Isoelectric Point: 5.1090

>NTDB_id=427594 G8O30_RS05260 WP_275576525.1 1039292..1040338(+) (recA) [Mangrovibacillus cuniculi strain R1DC41]
MSDRQAALEMALKQIEKQFGKGSVMKLGEQTERRISTSPSGSLALDVALGVGGYPRGRVVEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNRT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEIIDIGSELDIVQKSGSWYSYNEERLGQGRENAKQYLKEHKELRDSIMYK
IREHYQLDKPKEDPGDQEEMLNSLLDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=427594 G8O30_RS05260 WP_275576525.1 1039292..1040338(+) (recA) [Mangrovibacillus cuniculi strain R1DC41]
GTGAGCGATCGTCAAGCCGCATTAGAAATGGCATTAAAGCAGATTGAGAAGCAATTCGGAAAAGGATCTGTCATGAAATT
AGGGGAACAAACAGAACGAAGAATCTCAACGAGTCCTAGTGGCTCTCTAGCATTAGACGTTGCACTTGGCGTAGGTGGAT
ATCCAAGAGGACGTGTGGTAGAAATATATGGCCCAGAAAGCTCTGGTAAAACAACAGTTGCACTACACGCTATTGCTGAA
GTTCAAGCGAAAGGTGGACAAGCAGCATTTATTGATGCGGAACATGCTTTAGACCCTGTGTATGCACAAAAATTAGGTGT
AAATATCGATGAGCTATTATTATCGCAACCTGATACTGGTGAACAAGCATTAGAAATTGCTGAAGCATTAGTTCGCTCTG
GTGCTATTGATATTATCGTAGTTGACTCAGTTGCTGCGTTAGTTCCTAAAGCGGAAATTGAAGGTGAGATGGGTGATTCT
CATGTAGGGTTACAAGCTCGTCTGATGTCTCAAGCGTTAAGAAAGCTTTCCGGTGCTATTAATAAATCAAATACTATTGC
TATCTTCATTAACCAAATTCGTGAAAAAGTAGGCGTAATGTTCGGGAATCCAGAGACTACTCCTGGAGGAAGAGCTTTAA
AATTCTATTCATCCGTTCGCTTAGAAGTACGCCGTGCAGAAACGCTTAAACAAGGTAACGATATGGTAGGTAATAGAACA
AAAGTAAAAGTAGTAAAAAATAAAGTCGCACCACCATTCCGTGTTGCAGAAGTAGACATCATGTACGGAGAAGGGATTTC
TCGTGAAGGAGAAATTATCGATATCGGTTCCGAGTTGGATATTGTTCAAAAAAGTGGTTCTTGGTATTCCTATAATGAGG
AGCGTCTAGGGCAAGGTAGAGAGAACGCTAAGCAATATCTAAAAGAACATAAAGAACTTCGTGACTCCATCATGTATAAG
ATTCGTGAACATTATCAATTAGATAAACCGAAAGAAGATCCTGGTGATCAAGAAGAAATGCTAAACAGTTTATTAGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S8CAJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.11

94.253

0.83
  recA Latilactobacillus sakei subsp. sakei 23K

73.487

99.713

0.733
  recA Streptococcus pneumoniae D39

63.562

100

0.667
  recA Streptococcus pneumoniae Rx1

63.562

100

0.667
  recA Streptococcus pneumoniae R6

63.562

100

0.667
  recA Streptococcus pneumoniae TIGR4

63.562

100

0.667
  recA Streptococcus pyogenes NZ131

69.113

93.966

0.649
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus mitis NCTC 12261

67.273

94.828

0.638
  recA Streptococcus mitis SK321

66.97

94.828

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.828

0.632
  recA Neisseria gonorrhoeae strain FA1090

67.601

92.241

0.624
  recA Neisseria gonorrhoeae MS11

67.601

92.241

0.624
  recA Neisseria gonorrhoeae MS11

67.601

92.241

0.624
  recA Ralstonia pseudosolanacearum GMI1000

69.032

89.08

0.615
  recA Helicobacter pylori 26695

65.217

92.529

0.603
  recA Helicobacter pylori strain NCTC11637

65.217

92.529

0.603
  recA Vibrio cholerae strain A1552

65.109

92.241

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.241

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

94.828

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.486

92.241

0.595
  recA Pseudomonas stutzeri DSM 10701

64.062

91.954

0.589
  recA Glaesserella parasuis strain SC1401

63.95

91.667

0.586
  recA Acinetobacter baylyi ADP1

63.354

92.529

0.586
  recA Acinetobacter baumannii D1279779

63.043

92.529

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

93.391

0.572