Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DER53_RS10505 Genome accession   NZ_CP049703
Coordinates   2027359..2028411 (+) Length   350 a.a.
NCBI ID   WP_062678186.1    Uniprot ID   A0A6G9J4S8
Organism   Parageobacillus toebii NBRC 107807 strain DSM 14590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022359..2033411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DER53_RS10475 (DER53_10475) - 2022414..2023130 (+) 717 WP_015863514.1 SDR family oxidoreductase -
  DER53_RS10480 (DER53_10480) - 2023192..2023440 (+) 249 WP_062678189.1 DUF3243 domain-containing protein -
  DER53_RS10485 (DER53_10485) - 2023573..2024364 (+) 792 WP_015863516.1 DUF3388 domain-containing protein -
  DER53_RS10490 (DER53_10490) - 2024389..2025273 (+) 885 WP_062753330.1 RodZ domain-containing protein -
  DER53_RS10495 (DER53_10495) pgsA 2025330..2025908 (+) 579 WP_015863518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DER53_RS10500 (DER53_10500) cinA 2025945..2027195 (+) 1251 WP_062678187.1 competence/damage-inducible protein A Machinery gene
  DER53_RS10505 (DER53_10505) recA 2027359..2028411 (+) 1053 WP_062678186.1 recombinase RecA Machinery gene
  DER53_RS10510 (DER53_10510) rny 2028872..2030428 (+) 1557 WP_015863523.1 ribonuclease Y -
  DER53_RS10515 (DER53_10515) - 2030512..2031306 (+) 795 WP_015863524.1 TIGR00282 family metallophosphoesterase -
  DER53_RS10520 (DER53_10520) spoVS 2031420..2031680 (+) 261 WP_015863525.1 stage V sporulation protein SpoVS -
  DER53_RS10525 (DER53_10525) - 2031773..2032696 (+) 924 WP_015863526.1 dipeptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38124.26 Da        Isoelectric Point: 5.2026

>NTDB_id=427323 DER53_RS10505 WP_062678186.1 2027359..2028411(+) (recA) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
MNQDRQAALEQALKQIEKQFGKGSIMRLGEQTDRKISTISSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQ
EIRRHYGIESPSVSNNANETQQEELGFLED

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=427323 DER53_RS10505 WP_062678186.1 2027359..2028411(+) (recA) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
GTGAATCAAGATCGTCAAGCCGCCTTAGAACAGGCGTTAAAACAGATCGAAAAGCAATTTGGAAAAGGCTCGATCATGAG
ACTTGGAGAACAAACAGACCGGAAAATTTCCACTATATCAAGCGGATCGCTTGCACTGGATATCGCTTTAGGAGTCGGCG
GATATCCGCGTGGACGCATTGTTGAAATATATGGGCCTGAATCTTCCGGGAAGACAACAGTTGCGCTTCATGCGATTGCC
GAAGTGCAAAAACAGGGGGGACAAGCTGCGTTTATTGATGCGGAGCACGCGCTTGATCCAGTTTATGCACAAAAGCTAGG
CGTAAACATCGATGAGTTGTTGCTTTCCCAGCCGGATACAGGAGAACAGGCATTGGAGATTGCCGAGGCATTAGTAAGAA
GCGGCGCGGTTGATATTATCGTTATTGACTCTGTTGCGGCGCTTGTACCGAAAGCGGAAATTGAAGGAGAAATGGGCGAT
GCCCACGTTGGTTTGCAAGCGCGTCTTATGTCACAAGCATTGCGCAAATTATCCGGAGCGATTAATAAATCAAAGGCAAT
CGCTATTTTCATCAACCAAATTCGCGAAAAAGTCGGAGTGATGTTTGGAAATCCGGAGACGACACCAGGCGGCCGAGCTC
TAAAATTTTATGCTTCGGTCCGTTTAGAAGTGCGCCGTGCCGAACAAATTAAACAGGGCAATGACATGGTTGGAAATAAA
ACAAAAATTAAAGTAGTAAAAAATAAAGTTGCCCCTCCATTTAAAACGGCTGATGTAGATATTATGTACGGAGAGGGAAT
TTCCCGAGAAGGCGAAATCATCGATATGGCATCAGAGCTGGATATCGTGCAAAAAAGCGGTTCTTGGTATTCGTATAAAG
ACGAGCGTCTAGGTCAAGGACGTGAAAATGCAAAACAGTTTTTAAAAGAAAATCCGCATATCGCTGAAGAAATTGCACAA
GAAATCCGTAGACATTACGGAATTGAATCGCCTTCTGTTTCGAACAACGCAAACGAGACGCAACAAGAGGAGCTTGGATT
TTTAGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J4S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.364

94.286

0.814
  recA Latilactobacillus sakei subsp. sakei 23K

74.352

99.143

0.737
  recA Streptococcus pneumoniae Rx1

69.364

98.857

0.686
  recA Streptococcus pneumoniae D39

69.364

98.857

0.686
  recA Streptococcus pneumoniae R6

69.364

98.857

0.686
  recA Streptococcus pneumoniae TIGR4

69.364

98.857

0.686
  recA Streptococcus mitis NCTC 12261

71.429

94

0.671
  recA Streptococcus mitis SK321

71.125

94

0.669
  recA Streptococcus pyogenes NZ131

66.954

99.429

0.666
  recA Streptococcus mutans UA159

70.213

94

0.66
  recA Lactococcus lactis subsp. cremoris KW2

68.997

94

0.649
  recA Ralstonia pseudosolanacearum GMI1000

66.159

93.714

0.62
  recA Neisseria gonorrhoeae MS11

62.791

98.286

0.617
  recA Neisseria gonorrhoeae MS11

62.791

98.286

0.617
  recA Neisseria gonorrhoeae strain FA1090

62.791

98.286

0.617
  recA Vibrio cholerae strain A1552

66.873

92.286

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

92.286

0.617
  recA Glaesserella parasuis strain SC1401

61.782

99.429

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.848

94.286

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

93.714

0.606
  recA Acinetobacter baylyi ADP1

61.516

98

0.603
  recA Pseudomonas stutzeri DSM 10701

65.325

92.286

0.603
  recA Acinetobacter baumannii D1279779

64.615

92.857

0.6
  recA Helicobacter pylori strain NCTC11637

63.11

93.714

0.591
  recA Helicobacter pylori 26695

63.11

93.714

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.776

90.571

0.569