Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DER53_RS10500 Genome accession   NZ_CP049703
Coordinates   2025945..2027195 (+) Length   416 a.a.
NCBI ID   WP_062678187.1    Uniprot ID   A0A6G9J368
Organism   Parageobacillus toebii NBRC 107807 strain DSM 14590     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2020945..2032195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DER53_RS10470 (DER53_10470) - 2021081..2022373 (+) 1293 WP_015863513.1 pitrilysin family protein -
  DER53_RS10475 (DER53_10475) - 2022414..2023130 (+) 717 WP_015863514.1 SDR family oxidoreductase -
  DER53_RS10480 (DER53_10480) - 2023192..2023440 (+) 249 WP_062678189.1 DUF3243 domain-containing protein -
  DER53_RS10485 (DER53_10485) - 2023573..2024364 (+) 792 WP_015863516.1 DUF3388 domain-containing protein -
  DER53_RS10490 (DER53_10490) - 2024389..2025273 (+) 885 WP_062753330.1 RodZ domain-containing protein -
  DER53_RS10495 (DER53_10495) pgsA 2025330..2025908 (+) 579 WP_015863518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DER53_RS10500 (DER53_10500) cinA 2025945..2027195 (+) 1251 WP_062678187.1 competence/damage-inducible protein A Machinery gene
  DER53_RS10505 (DER53_10505) recA 2027359..2028411 (+) 1053 WP_062678186.1 recombinase RecA Machinery gene
  DER53_RS10510 (DER53_10510) rny 2028872..2030428 (+) 1557 WP_015863523.1 ribonuclease Y -
  DER53_RS10515 (DER53_10515) - 2030512..2031306 (+) 795 WP_015863524.1 TIGR00282 family metallophosphoesterase -
  DER53_RS10520 (DER53_10520) spoVS 2031420..2031680 (+) 261 WP_015863525.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45397.32 Da        Isoelectric Point: 6.1923

>NTDB_id=427322 DER53_RS10500 WP_062678187.1 2025945..2027195(+) (cinA) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
MNAEIIAVGSELLLGQIANTNAQFLSEKLAELGINVYFHTVVGDNAGRLEQAVRVAQARAELIIFTGGLGPTKDDLTKET
IARLLGRELVIDEEALRSIEAYFARTNRTMTENNKKQALVLQGSTILKNEHGMAPGMAITLNSITYMLLPGPPKEMQPMF
LKYGRPFLMEQLGRHERIESRVLRFFGIGESQLETDIEDLIDQQSNPTIAPLAGDGEVALRLTAKHHSEIEAKKLLDKTE
QAILERVGRYFYGYNDETLFKKTVKMLKEKKKTIAAAESLTGGLFLTELTAIPGASQVVRGGVVCYANEVKEKVLHVPAS
VLTTDGAVSERCAQLLAENVRTLCHADIGISFTGVAGPDPLEGKPVGTVYIGISTPENETEVYALALPGQRDAIRIRTAK
YGCSIILKKLAAAYEG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=427322 DER53_RS10500 WP_062678187.1 2025945..2027195(+) (cinA) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
TTGAATGCGGAGATTATTGCTGTCGGCTCTGAGTTATTGCTTGGGCAGATTGCCAACACGAATGCACAGTTTTTATCTGA
AAAGCTCGCTGAACTTGGAATCAATGTCTATTTTCATACCGTTGTAGGCGACAATGCCGGCCGGCTCGAACAGGCGGTAA
GAGTGGCGCAGGCGCGTGCCGAACTCATTATTTTTACTGGCGGGCTTGGGCCGACGAAAGATGATTTAACGAAAGAAACG
ATCGCCCGCCTGTTAGGGCGCGAGCTTGTGATCGATGAGGAAGCGCTTCGTTCCATTGAAGCATATTTTGCCCGCACAAA
CCGGACCATGACAGAAAATAATAAAAAACAGGCGCTTGTATTACAAGGATCTACTATATTGAAAAACGAACACGGAATGG
CACCTGGAATGGCAATTACGCTGAATTCAATTACGTATATGCTTCTTCCCGGCCCTCCAAAAGAAATGCAGCCGATGTTT
CTCAAATATGGCCGACCGTTTTTAATGGAACAGCTTGGCCGTCATGAGCGCATTGAATCGCGTGTATTACGCTTTTTCGG
AATCGGTGAGTCGCAGCTGGAAACAGACATTGAAGATCTTATTGATCAACAATCAAACCCGACGATTGCCCCGCTTGCTG
GTGACGGAGAAGTAGCGTTGCGCTTGACCGCGAAACACCATTCCGAAATCGAAGCAAAAAAACTTTTAGATAAAACGGAA
CAAGCGATTTTAGAGCGCGTCGGCCGCTATTTTTATGGCTATAATGACGAAACGTTGTTTAAAAAGACCGTGAAGATGTT
GAAGGAAAAAAAGAAAACGATCGCGGCGGCAGAAAGCCTCACAGGCGGACTTTTCTTAACCGAATTAACGGCCATTCCCG
GCGCTTCTCAAGTTGTCCGCGGCGGAGTTGTCTGCTATGCCAATGAAGTAAAAGAGAAAGTTCTTCACGTTCCTGCTTCT
GTTTTGACAACAGATGGAGCAGTAAGCGAACGTTGTGCGCAGCTATTAGCGGAAAATGTCCGCACACTTTGTCATGCTGA
TATTGGCATCAGTTTTACAGGCGTAGCAGGACCAGACCCGCTTGAAGGAAAGCCAGTCGGCACTGTATATATTGGCATTT
CCACCCCTGAAAACGAGACAGAAGTCTATGCCCTTGCATTACCCGGTCAGCGTGATGCGATTCGAATTCGTACCGCGAAA
TATGGTTGCTCCATTATATTAAAAAAATTGGCGGCTGCATATGAAGGGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J368

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.275

98.077

0.601
  cinA Streptococcus mitis SK321

48.333

100

0.488
  cinA Streptococcus mitis NCTC 12261

48.095

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.857

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.483
  cinA Streptococcus pneumoniae R6

47.857

100

0.483
  cinA Streptococcus pneumoniae D39

47.619

100

0.481
  cinA Streptococcus mutans UA159

47.101

99.519

0.469
  cinA Streptococcus suis isolate S10

43.947

91.346

0.401