Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYO_RS31420 Genome accession   NC_016047
Coordinates   1868312..1869358 (+) Length   348 a.a.
NCBI ID   WP_014113838.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863312..1874358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS31390 (GYO_2042) ymfI 1863320..1864048 (+) 729 WP_014113834.1 elongation factor P 5-aminopentanone reductase -
  GYO_RS31395 (GYO_2043) - 1864129..1864386 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  GYO_RS31400 (GYO_2044) - 1864516..1865307 (+) 792 WP_003220998.1 YmfK family protein -
  GYO_RS31405 (GYO_2045) rodZ 1865374..1866240 (+) 867 WP_014113835.1 cell shape determination protein RodZ -
  GYO_RS31410 (GYO_2046) pgsA 1866290..1866871 (+) 582 WP_014113836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GYO_RS31415 (GYO_2047) cinA 1866889..1868139 (+) 1251 WP_014113837.1 competence/damage-inducible protein A Machinery gene
  GYO_RS31420 (GYO_2048) recA 1868312..1869358 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  GYO_RS31425 (GYO_2049) - 1869527..1870702 (+) 1176 WP_014113839.1 serine hydrolase -
  GYO_RS31430 (GYO_2050) rny 1870978..1872540 (+) 1563 WP_003221010.1 ribonuclease Y -
  GYO_RS31435 (GYO_2051) ymdB 1872610..1873404 (+) 795 WP_003221012.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  GYO_RS31440 (GYO_2052) spoVS 1873603..1873863 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37952.10 Da        Isoelectric Point: 4.8458

>NTDB_id=42584 GYO_RS31420 WP_014113838.1 1868312..1869358(+) (recA) [Bacillus spizizenii TU-B-10]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGAVQQQAGEAQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=42584 GYO_RS31420 WP_014113838.1 1868312..1869358(+) (recA) [Bacillus spizizenii TU-B-10]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCATTAGGAATTGGCGGAT
ATCCGCGCGGGCGGATTATTGAAGTATATGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGCTAGATCCGGTATACGCGCAAAAGCTCGGAGT
CAATATCGAAGAGCTTTTACTGTCTCAGCCTGATACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCGCTGGTTCGAAGCG
GTGCAGTTGACATTGTTGTTGTCGATTCTGTGGCAGCTCTCGTGCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGCTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGAAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTAGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTATTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCTTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATCACGGAGCAGTTCAGCAGCAAGCTGGAGAGGCACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.851

100

0.989
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

66.474

99.425

0.661
  recA Streptococcus pneumoniae Rx1

66.474

99.425

0.661
  recA Streptococcus pneumoniae R6

66.474

99.425

0.661
  recA Streptococcus pneumoniae TIGR4

66.474

99.425

0.661
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.831

91.667

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

61.562

95.69

0.589
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment