Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GYO_RS31415 Genome accession   NC_016047
Coordinates   1866889..1868139 (+) Length   416 a.a.
NCBI ID   WP_014113837.1    Uniprot ID   G4NVC0
Organism   Bacillus spizizenii TU-B-10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1861889..1873139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS31385 (GYO_2041) yfmH 1861980..1863266 (+) 1287 WP_014113833.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GYO_RS31390 (GYO_2042) ymfI 1863320..1864048 (+) 729 WP_014113834.1 elongation factor P 5-aminopentanone reductase -
  GYO_RS31395 (GYO_2043) - 1864129..1864386 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  GYO_RS31400 (GYO_2044) - 1864516..1865307 (+) 792 WP_003220998.1 YmfK family protein -
  GYO_RS31405 (GYO_2045) rodZ 1865374..1866240 (+) 867 WP_014113835.1 cell shape determination protein RodZ -
  GYO_RS31410 (GYO_2046) pgsA 1866290..1866871 (+) 582 WP_014113836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GYO_RS31415 (GYO_2047) cinA 1866889..1868139 (+) 1251 WP_014113837.1 competence/damage-inducible protein A Machinery gene
  GYO_RS31420 (GYO_2048) recA 1868312..1869358 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  GYO_RS31425 (GYO_2049) - 1869527..1870702 (+) 1176 WP_014113839.1 serine hydrolase -
  GYO_RS31430 (GYO_2050) rny 1870978..1872540 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45591.91 Da        Isoelectric Point: 5.2539

>NTDB_id=42583 GYO_RS31415 WP_014113837.1 1866889..1868139(+) (cinA) [Bacillus spizizenii TU-B-10]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPDRLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRQLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKSITISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDMKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=42583 GYO_RS31415 WP_014113837.1 1866889..1868139(+) (cinA) [Bacillus spizizenii TU-B-10]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTATTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGACCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCAGCTTGTGTTAAATGATGAGGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGGACGATGTCACCTAATAATAGAAAACAGGCGCTTGTAATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGACCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATTGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCGGCAGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAAGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTCGTTTGCTATACAAACGACATGAAGCAGAATGTGCTTGGC
GTTAAGAAGGAAACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGTAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGTATTTCAGCTAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGTGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.349

99.76

0.971
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus mutans UA159

45.521

99.279

0.452
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment