Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G3580_RS02035 Genome accession   NZ_CP048836
Coordinates   455060..456103 (-) Length   347 a.a.
NCBI ID   WP_173763676.1    Uniprot ID   -
Organism   Nitrogeniibacter mangrovi strain M9-3-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 450060..461103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3580_RS02000 (G3580_01995) - 450269..450502 (-) 234 WP_173763669.1 PsiF family protein -
  G3580_RS02005 (G3580_02000) hprK 450624..451562 (-) 939 WP_173763670.1 HPr(Ser) kinase/phosphatase -
  G3580_RS02010 (G3580_02005) ptsN 451531..452016 (-) 486 WP_173763671.1 PTS IIA-like nitrogen regulatory protein PtsN -
  G3580_RS02015 (G3580_02010) hpf 452142..452465 (-) 324 WP_173763672.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  G3580_RS02020 (G3580_02015) rpoN/rpoN1 452480..453877 (-) 1398 WP_173763673.1 RNA polymerase factor sigma-54 Machinery gene
  G3580_RS02025 (G3580_02020) lptB 453893..454615 (-) 723 WP_173763674.1 LPS export ABC transporter ATP-binding protein -
  G3580_RS02030 (G3580_02025) recX 454602..455048 (-) 447 WP_173763675.1 recombination regulator RecX -
  G3580_RS02035 (G3580_02030) recA 455060..456103 (-) 1044 WP_173763676.1 recombinase RecA Machinery gene
  G3580_RS02040 (G3580_02035) - 456182..456667 (-) 486 WP_173763677.1 CinA family protein -
  G3580_RS02045 (G3580_02040) - 456677..457159 (-) 483 WP_173763678.1 phosphatidylglycerophosphatase A -
  G3580_RS02050 (G3580_02045) thiL 457212..458180 (-) 969 WP_173763679.1 thiamine-phosphate kinase -
  G3580_RS02055 (G3580_02050) - 458614..460347 (+) 1734 WP_407670986.1 N-acetylglutaminylglutamine amidotransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36856.22 Da        Isoelectric Point: 5.0389

>NTDB_id=423436 G3580_RS02035 WP_173763676.1 455060..456103(-) (recA) [Nitrogeniibacter mangrovi strain M9-3-2]
MDDNKAKALSAALSQIEKQFGKGSIMRMGDGGMAKDIDAVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFVDAEHALDVGYAEKLGVNIDDLLVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRIDIRRTGTIKKGDEVIGS
ETRCKVVKNKVAPPFKQANFDILYGEGISREGEIIDLGVEGKIVDKAGAWYSYGGNKIGQGKDNTREFLKGNPALAREIE
NKVRESFGLPPMAAIAAAVESTEPTEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=423436 G3580_RS02035 WP_173763676.1 455060..456103(-) (recA) [Nitrogeniibacter mangrovi strain M9-3-2]
ATGGATGACAACAAGGCCAAGGCACTCTCGGCCGCCCTGTCCCAGATCGAAAAGCAGTTCGGCAAAGGCTCGATCATGCG
CATGGGCGATGGCGGCATGGCCAAGGACATCGACGCTGTCTCCACCGGCTCGCTCGGACTCGACATCGCCCTCGGCCTCG
GCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTATGGCCCGGAATCGTCCGGCAAGACGACCCTGACCCTGCAGGTGATC
GCCGAAATGCAGAAGCTGGGCGGCACCGCCGCCTTCGTCGACGCCGAGCATGCCCTAGACGTGGGCTATGCCGAGAAGCT
CGGCGTCAACATCGACGACCTGCTCGTCTCCCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCCGGCGGCGTGGACATCGTGGTCATCGACTCGGTGGCCGCCCTGACCCCTAAGGCCGAGATCGAAGGTGAAATGGGC
GACCAGCTGCCCGGCCTCCAGGCCCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGCCAACATCAAGCGCACCAACAC
CCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACTCCTCGGTGCGTATCGACATCCGCCGCACCGGCACCATCAAGAAGGGCGACGAGGTCATCGGCTCC
GAGACCCGCTGCAAGGTGGTCAAGAACAAGGTCGCGCCGCCGTTCAAACAGGCCAACTTCGACATCCTCTACGGCGAGGG
CATCTCGCGTGAGGGCGAGATCATCGACCTGGGCGTGGAAGGCAAGATCGTCGACAAGGCCGGCGCCTGGTATTCGTACG
GCGGCAACAAGATCGGTCAGGGCAAGGACAACACCCGCGAGTTCCTCAAGGGGAACCCCGCGCTGGCCCGCGAGATCGAG
AACAAGGTGCGGGAAAGCTTCGGCCTGCCGCCGATGGCCGCCATCGCCGCCGCGGTCGAATCGACCGAGCCCACCGAGGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

76.571

100

0.772
  recA Acinetobacter baylyi ADP1

70.845

98.847

0.7
  recA Pseudomonas stutzeri DSM 10701

74.383

93.372

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.795

98.271

0.686
  recA Vibrio cholerae strain A1552

69.795

98.271

0.686
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae strain FA1090

72.531

93.372

0.677
  recA Acinetobacter baumannii D1279779

71.865

94.236

0.677
  recA Glaesserella parasuis strain SC1401

68.06

96.542

0.657
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

95.389

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.465

95.965

0.628
  recA Helicobacter pylori strain NCTC11637

65.653

94.813

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

94.813

0.62
  recA Helicobacter pylori 26695

65.35

94.813

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

63.609

94.236

0.599
  recA Streptococcus pyogenes NZ131

59.026

100

0.594
  recA Streptococcus mutans UA159

61.329

95.389

0.585
  recA Streptococcus pneumoniae D39

60.79

94.813

0.576
  recA Streptococcus pneumoniae R6

60.79

94.813

0.576
  recA Streptococcus pneumoniae TIGR4

60.79

94.813

0.576
  recA Streptococcus pneumoniae Rx1

60.79

94.813

0.576
  recA Streptococcus mitis SK321

60.79

94.813

0.576
  recA Streptococcus mitis NCTC 12261

60.79

94.813

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.982

96.254

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.939

94.236

0.565