Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOP56_RS08195 Genome accession   NZ_CP048799
Coordinates   2125496..2126554 (-) Length   352 a.a.
NCBI ID   WP_003337007.1    Uniprot ID   A0A075R4Q1
Organism   Brevibacillus sp. 7WMA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2120496..2131554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS08175 (GOP56_08175) spoVS 2121528..2121788 (-) 261 WP_003337012.1 stage V sporulation protein SpoVS -
  GOP56_RS08180 (GOP56_08180) - 2121905..2122699 (-) 795 WP_003341275.1 TIGR00282 family metallophosphoesterase -
  GOP56_RS08185 (GOP56_08185) rny 2122844..2124394 (-) 1551 WP_003337009.1 ribonuclease Y -
  GOP56_RS08190 (GOP56_08190) - 2124755..2125414 (-) 660 WP_163245359.1 RecX family transcriptional regulator -
  GOP56_RS08195 (GOP56_08195) recA 2125496..2126554 (-) 1059 WP_003337007.1 recombinase RecA Machinery gene
  GOP56_RS08200 (GOP56_08200) - 2126729..2128318 (-) 1590 WP_121474644.1 DEAD/DEAH box helicase -
  GOP56_RS08205 (GOP56_08205) cinA 2128335..2129579 (-) 1245 WP_003341282.1 competence/damage-inducible protein A Machinery gene
  GOP56_RS08210 (GOP56_08210) pgsA 2129599..2130174 (-) 576 WP_003337004.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GOP56_RS08215 (GOP56_08215) rimO 2130175..2131518 (-) 1344 WP_003337003.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37796.14 Da        Isoelectric Point: 4.9005

>NTDB_id=423079 GOP56_RS08195 WP_003337007.1 2125496..2126554(-) (recA) [Brevibacillus sp. 7WMA2]
MSDRRAALESALRQIEKQFGKGSIMKMGEMAHSQVSTVSTGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAEGIKQGNDIVGTKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGSILDIGAELDIVAKSGAWYAFNEERLGQGRENAKQFLKENPAIAAQIDQK
IREYYSLNPNSIPEGEAVLDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=423079 GOP56_RS08195 WP_003337007.1 2125496..2126554(-) (recA) [Brevibacillus sp. 7WMA2]
TTGTCAGATCGTCGCGCTGCGCTTGAGAGTGCTTTAAGACAAATAGAAAAACAGTTCGGGAAAGGCTCCATCATGAAGAT
GGGAGAAATGGCACATTCACAGGTTTCTACTGTTTCAACAGGAGCCTTAGCTCTTGATATCGCACTTGGTGTCGGCGGTT
TCCCACGTGGCCGTATTATTGAGATTTACGGGCCAGAATCCTCTGGTAAAACAACAGTTGCACTTCATGCCATTGCAGAA
GTACAGAAGCAAGGTGGACAAGCAGCCTTTATTGATGCAGAGCATGCTCTAGACCCTGTTTATGCTGCTAAATTGGGTGT
TAACATAGAAGAATTACTTTTATCCCAACCAGACACAGGAGAACAAGCTTTAGAAATTGCAGAAGCTCTCGTACGCTCTG
GCGCTGTAGATATTATTGTAGTAGACTCCGTAGCGGCTTTGGTACCAAAAGCTGAGATTGAAGGAGAAATGGGTGACTCT
CACGTTGGTCTACAAGCTCGTTTGATGTCTCAAGCTTTACGTAAGCTTTCTGGAGCTATCAATAAATCCAAAACGATTGC
GATCTTTATTAACCAGTTGCGTGAAAAAGTGGGCGTTATGTTTGGAAACCCAGAAACTACTCCTGGTGGACGTGCTTTGA
AATTCTATGCTAGTGTACGTCTTGATGTGCGTAAAGCAGAGGGAATTAAACAAGGCAATGATATAGTAGGTACAAAGACT
AAAATTAAAGTTGTAAAAAATAAAGTAGCTCCTCCGTTCAAAGTAGCCGAAGTCGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGAAGTATTCTGGATATTGGAGCTGAGCTGGACATTGTTGCTAAAAGCGGCGCCTGGTATGCATTTAATGAGG
AACGTTTAGGTCAAGGTCGTGAAAATGCAAAACAGTTCTTGAAAGAGAATCCAGCTATTGCAGCTCAGATTGACCAAAAA
ATTCGAGAATATTACAGCTTGAATCCTAATTCCATCCCAGAGGGAGAAGCGGTTCTCGATCCAGAGCAGGATGAAGAGCC
AACTTTTGATTTAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075R4Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.133

94.318

0.784
  recA Streptococcus pneumoniae Rx1

67.989

100

0.682
  recA Streptococcus pneumoniae D39

67.989

100

0.682
  recA Streptococcus pneumoniae R6

67.989

100

0.682
  recA Streptococcus pneumoniae TIGR4

67.989

100

0.682
  recA Latilactobacillus sakei subsp. sakei 23K

71.988

94.318

0.679
  recA Streptococcus mitis NCTC 12261

67.139

100

0.673
  recA Streptococcus mitis SK321

67.139

100

0.673
  recA Streptococcus pyogenes NZ131

66.102

100

0.665
  recA Streptococcus mutans UA159

65.537

100

0.659
  recA Lactococcus lactis subsp. cremoris KW2

68.563

94.886

0.651
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.295

98.295

0.622
  recA Vibrio cholerae strain A1552

64.848

93.75

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.848

93.75

0.608
  recA Ralstonia pseudosolanacearum GMI1000

67.302

89.489

0.602
  recA Acinetobacter baumannii D1279779

60

99.432

0.597
  recA Glaesserella parasuis strain SC1401

62.874

94.886

0.597
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Helicobacter pylori 26695

61.446

94.318

0.58
  recA Helicobacter pylori strain NCTC11637

61.446

94.318

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Acinetobacter baylyi ADP1

62.654

92.045

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

92.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

91.477

0.571

Multiple sequence alignment