Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GOP56_RS08205 Genome accession   NZ_CP048799
Coordinates   2128335..2129579 (-) Length   414 a.a.
NCBI ID   WP_003341282.1    Uniprot ID   -
Organism   Brevibacillus sp. 7WMA2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2123335..2134579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS08190 (GOP56_08190) - 2124755..2125414 (-) 660 WP_163245359.1 RecX family transcriptional regulator -
  GOP56_RS08195 (GOP56_08195) recA 2125496..2126554 (-) 1059 WP_003337007.1 recombinase RecA Machinery gene
  GOP56_RS08200 (GOP56_08200) - 2126729..2128318 (-) 1590 WP_121474644.1 DEAD/DEAH box helicase -
  GOP56_RS08205 (GOP56_08205) cinA 2128335..2129579 (-) 1245 WP_003341282.1 competence/damage-inducible protein A Machinery gene
  GOP56_RS08210 (GOP56_08210) pgsA 2129599..2130174 (-) 576 WP_003337004.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GOP56_RS08215 (GOP56_08215) rimO 2130175..2131518 (-) 1344 WP_003337003.1 30S ribosomal protein S12 methylthiotransferase RimO -
  GOP56_RS08220 (GOP56_08220) - 2131762..2132688 (-) 927 WP_003337002.1 RodZ domain-containing protein -
  GOP56_RS08225 (GOP56_08225) - 2132701..2133492 (-) 792 WP_018670903.1 DUF3388 domain-containing protein -
  GOP56_RS08230 (GOP56_08230) - 2133825..2134082 (-) 258 WP_003337000.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45710.13 Da        Isoelectric Point: 4.9319

>NTDB_id=423080 GOP56_RS08205 WP_003341282.1 2128335..2129579(-) (cinA) [Brevibacillus sp. 7WMA2]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEVGINVYYHITVGDNYERMLQVIERAKSRSDLIIFTGGLGPTQDDLTKDV
VADHLGHKLVTDEKAMANIRDFFERRGTDMTENNRKQALVIEGSTVFDNDHGMAPGMGITQEGVTYVLLPGPPSEMYPMM
ENYVMPFLASLGNEHQIFHSRVFRFFGIGESLLEAKLIDLIEEQSNPTIAPYAKEFEVTLRITARATSVEEAERLLRPVE
EEIRNRVGEFIYAVGESPLHQVLYEQLLVKQETISFAESCTGGTVSQLLTSVPGASQVYRGGIVCYSNEIKHQWLDVPLE
VLETEGAVSETTARLLAENIRQKMGTTYGVSVTGVAGPESSEGKPVGLVYIGIASEKQPTLVKKVQVAGQRRAIIGRVAK
NALYYALQQLHCND

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=423080 GOP56_RS08205 WP_003341282.1 2128335..2129579(-) (cinA) [Brevibacillus sp. 7WMA2]
ATGAAAGCGGAAATAATCGCGGTTGGAACTGAGTTATTACTTGGACAAATTGCTAATACAAACGCGCAGTTTTTATCGCA
AAAGCTAGCAGAAGTAGGAATCAATGTTTATTATCACATAACAGTTGGCGATAATTATGAACGAATGCTACAAGTGATAG
AACGTGCGAAATCGCGTTCCGATCTCATCATTTTTACCGGGGGGTTGGGCCCTACGCAGGATGATTTGACCAAAGACGTA
GTGGCCGACCATCTTGGTCACAAGCTAGTCACGGATGAAAAAGCAATGGCGAACATTCGTGATTTTTTTGAGAGACGCGG
TACTGACATGACTGAAAATAATCGTAAGCAAGCCCTTGTAATTGAGGGATCGACAGTCTTTGATAATGATCACGGAATGG
CACCAGGAATGGGGATTACCCAAGAGGGCGTTACATATGTCTTGTTGCCTGGTCCCCCAAGCGAAATGTATCCGATGATG
GAAAATTATGTGATGCCGTTTTTGGCTTCTTTAGGAAATGAGCATCAAATCTTTCATTCTCGTGTCTTTCGCTTTTTTGG
TATCGGAGAATCTCTGTTAGAGGCAAAGCTGATAGACTTAATTGAGGAGCAATCCAATCCGACAATTGCCCCCTATGCCA
AGGAGTTTGAGGTGACGTTGCGCATTACGGCTCGCGCTACCTCTGTGGAGGAAGCAGAGAGATTGCTACGTCCTGTTGAA
GAGGAGATTCGCAATCGTGTAGGTGAGTTTATATATGCAGTAGGGGAATCTCCGTTGCATCAGGTGCTTTATGAGCAGCT
ACTAGTAAAACAAGAGACGATTTCTTTTGCTGAAAGCTGTACAGGGGGCACTGTTTCACAACTGCTTACCTCGGTTCCCG
GTGCGTCGCAGGTATATCGAGGAGGAATTGTTTGCTATTCCAATGAAATCAAGCATCAATGGCTGGATGTGCCTCTTGAA
GTCTTAGAGACAGAAGGGGCTGTCAGTGAAACAACGGCTCGGCTTTTAGCTGAGAATATTCGCCAAAAGATGGGCACAAC
CTATGGCGTTTCTGTTACCGGTGTAGCAGGACCTGAGTCTTCCGAGGGAAAACCTGTGGGACTGGTCTATATCGGAATCG
CCAGTGAGAAGCAGCCTACTTTGGTAAAAAAGGTGCAAGTTGCGGGACAGCGCAGAGCGATAATTGGGCGTGTTGCCAAG
AATGCTCTATATTATGCGCTCCAGCAGCTTCACTGTAATGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.951

99.034

0.514
  cinA Streptococcus mitis NCTC 12261

48.284

98.551

0.476
  cinA Streptococcus mitis SK321

48.039

98.551

0.473
  cinA Streptococcus pneumoniae TIGR4

47.794

98.551

0.471
  cinA Streptococcus pneumoniae Rx1

47.549

98.551

0.469
  cinA Streptococcus pneumoniae R6

47.549

98.551

0.469
  cinA Streptococcus pneumoniae D39

47.304

98.551

0.466
  cinA Streptococcus mutans UA159

47.146

97.343

0.459
  cinA Streptococcus suis isolate S10

44.063

91.546

0.403

Multiple sequence alignment