Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G0028_RS07985 Genome accession   NZ_CP048659
Coordinates   1632785..1633831 (-) Length   348 a.a.
NCBI ID   WP_130073825.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627785..1638831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS07950 (G0028_07935) - 1627800..1628279 (+) 480 WP_180046690.1 OmpH family outer membrane protein -
  G0028_RS07955 (G0028_07940) lpxD 1628283..1629353 (+) 1071 WP_180046687.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  G0028_RS07960 (G0028_07945) fabZ 1629356..1629841 (+) 486 WP_130073829.1 3-hydroxyacyl-ACP dehydratase FabZ -
  G0028_RS07965 (G0028_07950) lpxA 1629838..1630626 (+) 789 WP_130073828.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  G0028_RS07970 (G0028_07955) - 1630693..1631562 (-) 870 WP_227554805.1 YbgF trimerization domain-containing protein -
  G0028_RS07980 (G0028_07965) - 1632043..1632639 (-) 597 WP_174492866.1 regulatory protein RecX -
  G0028_RS07985 (G0028_07970) recA 1632785..1633831 (-) 1047 WP_130073825.1 recombinase RecA Machinery gene
  G0028_RS07990 (G0028_07975) - 1633988..1634446 (-) 459 WP_130073824.1 RNA-binding S4 domain-containing protein -
  G0028_RS07995 (G0028_07980) - 1634430..1635116 (-) 687 WP_130073823.1 HAD-IA family hydrolase -
  G0028_RS08000 (G0028_07985) - 1635483..1636064 (+) 582 WP_180046685.1 lysozyme -
  G0028_RS08005 (G0028_07990) - 1636210..1637061 (+) 852 WP_180046683.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  G0028_RS08010 (G0028_07995) - 1637123..1637860 (+) 738 WP_130073820.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37588.03 Da        Isoelectric Point: 5.0279

>NTDB_id=422169 G0028_RS07985 WP_130073825.1 1632785..1633831(-) (recA) [Acinetobacter piscicola strain YH12207_T]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVESVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFREAVFQILYGKGVNHLGELIDLAVAQDIVNKAGAWYSYQGEKIGQGKNNAIRHMEENPEMAAAIET
LIREKLLTTTNAAPVSEDDEIEPEFLDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=422169 G0028_RS07985 WP_130073825.1 1632785..1633831(-) (recA) [Acinetobacter piscicola strain YH12207_T]
ATGGATGATAACAAAAGTAAAGCGCTGAATGCTGCGTTAAGTCAAATTGAAAAACAATTTGGTAAAAATACAGTCATGCG
TTTAGGTGACAACACTGTACAAGCAGTCGAGTCTGTATCAACAGGTTCTTTAACCCTTGATATTGCACTCGGTATCGGTG
GTTTACCTAAAGGTCGTATTGTTGAGATTTATGGTCCTGAGTCTTCAGGTAAAACTACCATGACTTTACAAGCGATTGCA
CAATGCCAAAAAGCAGGTGGTACATGTGCTTTTATTGATGCCGAGCATGCACTCGACCCACAATATGCACGTAAACTTGG
CGTAGATATTGATAACCTACTGGTATCACAGCCTGACCACGGTGAACAAGCACTTGAAATTGCAGATATGCTAGTCCGCT
CTGGCGCGATTGACATGATCGTGGTCGACTCCGTTGCAGCCTTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGCGAC
TCACACATGGGCTTACAAGCACGTTTGATGAGCCAAGCATTACGTAAAATCACAGGTAATGCTAAACGTTCAAACTGTAT
GGTGATCTTTATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCTGAAACTACAACAGGTGGTAACGCAC
TTAAATTCTACGCTTCTGTACGTCTTGATATTCGCCGTATTGGTCAAGTCAAAGAAGGTGATGAAATCATTGGTTCAGAA
ACCCGTGTCAAAGTCGTTAAAAACAAAATGGCACCTCCTTTCCGTGAAGCAGTGTTCCAAATTTTATATGGTAAAGGCGT
TAACCATCTGGGTGAATTGATTGATCTTGCTGTTGCACAAGACATAGTCAACAAAGCAGGTGCTTGGTATTCTTATCAAG
GTGAAAAAATTGGTCAAGGTAAAAATAACGCCATTCGCCATATGGAAGAAAATCCTGAAATGGCGGCTGCGATTGAAACA
TTGATTCGTGAAAAATTACTCACCACAACCAATGCAGCACCCGTATCAGAAGATGATGAAATCGAGCCTGAATTTTTAGA
TGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.112

100

0.894
  recA Acinetobacter baumannii D1279779

88.728

99.425

0.882
  recA Pseudomonas stutzeri DSM 10701

75.953

97.989

0.744
  recA Vibrio cholerae strain A1552

72.404

96.839

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.404

96.839

0.701
  recA Glaesserella parasuis strain SC1401

71.818

94.828

0.681
  recA Ralstonia pseudosolanacearum GMI1000

70.552

93.678

0.661
  recA Neisseria gonorrhoeae MS11

70.062

93.103

0.652
  recA Neisseria gonorrhoeae MS11

70.062

93.103

0.652
  recA Neisseria gonorrhoeae strain FA1090

70.062

93.103

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.557

98.563

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

95.115

0.606
  recA Helicobacter pylori 26695

61.947

97.414

0.603
  recA Helicobacter pylori strain NCTC11637

61.652

97.414

0.601
  recA Streptococcus pneumoniae R6

60.472

97.414

0.589
  recA Streptococcus pneumoniae D39

60.472

97.414

0.589
  recA Streptococcus pneumoniae TIGR4

60.472

97.414

0.589
  recA Streptococcus pneumoniae Rx1

60.472

97.414

0.589
  recA Streptococcus mitis SK321

59.649

98.276

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.702

94.54

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.241

0.578
  recA Streptococcus mutans UA159

61.231

93.391

0.572
  recA Streptococcus pyogenes NZ131

60.366

94.253

0.569
  recA Streptococcus mitis NCTC 12261

61.3

92.816

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

58.16

96.839

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.816

0.543

Multiple sequence alignment