Detailed information NTG0041963

Bioinformatically predicted

Overview

• Name: comEA/comE1
• Type: Machinery gene
• Locus tag: CVAR_RS17835
• Genome accession: NC_015859
• Coordinates: 1059032..1059169 (+)
• Length: 45 a.a.
• NCBI ID: WP_234946380.1
• Uniprot ID: -
• Organism: Corynebacterium variabile DSM 44702
• Function: dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1054032..1064169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVAR_RS04965 (CVAR_0929)	nadD	1054269..1055039 (+)	771	WP_014009470.1	nicotinate-nucleotide adenylyltransferase	-
CVAR_RS04970 (CVAR_0930)	rsfS	1055145..1055645 (+)	501	WP_014009471.1	ribosome silencing factor	-
CVAR_RS04975 (CVAR_0931)	-	1055661..1056443 (+)	783	WP_014009472.1	histidine phosphatase family protein	-
CVAR_RS04980 (CVAR_0932)	-	1056440..1057777 (+)	1338	WP_041629880.1	DegV family protein	-
CVAR_RS17830	-	1058508..1058795 (+)	288	Protein_992	ComEC/Rec2 family competence protein	-
CVAR_RS17835	comEA/comE1	1059032..1059169 (+)	138	WP_234946380.1	helix-hairpin-helix domain-containing protein	Machinery gene
CVAR_RS04990 (CVAR_0933)	-	1059162..1061300 (+)	2139	WP_234946381.1	ComEC/Rec2 family competence protein	-
CVAR_RS04995 (CVAR_0934)	holA	1061324..1062337 (+)	1014	WP_014009475.1	DNA polymerase III subunit delta	-
CVAR_RS05000 (CVAR_0935)	-	1062541..1063785 (+)	1245	WP_014009476.1	MFS transporter	-

Sequence

Protein

• Length: 45 a.a.
• Molecular weight: 4873.58 Da
• Isoelectric Point: 4.4809

>NTDB_id=41963 CVAR_RS17835 WP_234946380.1 1059032..1059169(+) (comEA/comE1) [Corynebacterium variabile DSM 44702]
MGEKTAQAIIDWREANGPFTAPEQLMEVKGIGPAKFEALRDAVSV

Nucleotide

• Length: 138 bp

>NTDB_id=41963 CVAR_RS17835 WP_234946380.1 1059032..1059169(+) (comEA/comE1) [Corynebacterium variabile DSM 44702]
GTGGGGGAGAAGACCGCGCAGGCGATCATCGACTGGCGCGAGGCCAACGGTCCGTTCACCGCGCCCGAGCAGCTCATGGA
GGTCAAGGGGATCGGCCCGGCGAAGTTCGAGGCGCTGCGGGACGCCGTCAGTGTCTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (2-43)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA/comE1	Glaesserella parasuis strain SC1401	51.111	100	0.511
comEA/celA/cilE	Streptococcus pneumoniae Rx1	51.111	100	0.511
comEA/celA/cilE	Streptococcus pneumoniae D39	51.111	100	0.511
comEA/celA/cilE	Streptococcus pneumoniae R6	51.111	100	0.511
comEA/celA/cilE	Streptococcus mitis NCTC 12261	51.111	100	0.511
comEA/celA/cilE	Streptococcus mitis SK321	51.111	100	0.511
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	51.111	100	0.511
comEA	Vibrio cholerae strain A1552	64.706	75.556	0.489
comEA	Vibrio cholerae C6706	64.706	75.556	0.489
comA	Synechocystis sp. PCC 6803	50	97.778	0.489
comE1/comEA	Haemophilus influenzae Rd KW20	48.837	95.556	0.467
comEA	Acinetobacter baumannii strain A118	54.054	82.222	0.444
comEA	Acinetobacter baumannii D1279779	54.054	82.222	0.444
comE	Neisseria gonorrhoeae MS11	44.444	100	0.444
comE	Neisseria gonorrhoeae MS11	44.444	100	0.444
comE	Neisseria gonorrhoeae MS11	44.444	100	0.444
comE	Neisseria gonorrhoeae MS11	44.444	100	0.444
comEA	Lactococcus lactis subsp. cremoris KW2	44.444	100	0.444
comEA	Vibrio parahaemolyticus RIMD 2210633	44.186	95.556	0.422
comEA	Acinetobacter baylyi ADP1	42.222	100	0.422
comEA	Latilactobacillus sakei subsp. sakei 23K	42.222	100	0.422
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.304	100	0.422
comEA	Bacillus subtilis subsp. subtilis str. 168	40	100	0.4
comEA	Vibrio campbellii strain DS40M4	41.86	95.556	0.4
comEA	Thermus thermophilus HB27	42.5	88.889	0.378
comEA	Legionella pneumophila str. Paris	53.125	71.111	0.378
comEA	Legionella pneumophila strain ERS1305867	53.125	71.111	0.378