Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DNR44_RS10770 Genome accession   NZ_CP047673
Coordinates   2157676..2158737 (+) Length   353 a.a.
NCBI ID   WP_112222767.1    Uniprot ID   -
Organism   Planococcus halotolerans strain Y50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2152676..2163737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS10745 (DNR44_010695) ymfI 2153043..2153762 (+) 720 WP_112222771.1 elongation factor P 5-aminopentanone reductase -
  DNR44_RS10750 (DNR44_010700) - 2153873..2154676 (+) 804 WP_112222770.1 YmfK family protein -
  DNR44_RS10755 (DNR44_010705) - 2154691..2155569 (+) 879 WP_338046809.1 helix-turn-helix domain-containing protein -
  DNR44_RS10760 (DNR44_010710) pgsA 2155620..2156198 (+) 579 WP_135815611.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DNR44_RS10765 (DNR44_010715) cinA 2156248..2157483 (+) 1236 WP_112222768.1 competence/damage-inducible protein A Machinery gene
  DNR44_RS10770 (DNR44_010720) recA 2157676..2158737 (+) 1062 WP_112222767.1 recombinase RecA Machinery gene
  DNR44_RS10775 (DNR44_010725) rny 2159063..2160619 (+) 1557 WP_112222766.1 ribonuclease Y -
  DNR44_RS10780 (DNR44_010730) - 2160685..2161482 (+) 798 WP_112223257.1 TIGR00282 family metallophosphoesterase -
  DNR44_RS10785 (DNR44_010735) miaB 2161583..2163130 (+) 1548 WP_112222765.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DNR44_RS10790 (DNR44_010740) - 2163131..2163565 (+) 435 WP_112222764.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38150.28 Da        Isoelectric Point: 5.0864

>NTDB_id=415186 DNR44_RS10770 WP_112222767.1 2157676..2158737(+) (recA) [Planococcus halotolerans strain Y50]
MSDRKAALDVALKQIEKQFGKGSVMKLGEKSDRNISSVSSGSLAVDSALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQASGGTAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGIINKSNSIVIFINQVREKIGVMFGNPETTTGGRALKFYSSIRMEVRRAEALKSGNDIIGNRT
KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGAELEIIQKSGSWYSYKEDRIGQGRENAKQYLRDHGDISNEIAGK
IREQYGMAAASYTIAASKEEPEEFNLLIDEDDK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=415186 DNR44_RS10770 WP_112222767.1 2157676..2158737(+) (recA) [Planococcus halotolerans strain Y50]
TTGAGTGATCGTAAAGCAGCGTTAGATGTTGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCAGTAATGAAATT
GGGAGAAAAAAGTGACCGTAATATTTCTTCGGTTTCAAGTGGTTCATTGGCAGTTGACTCTGCACTTGGAATAGGCGGTT
ACCCGCGTGGCCGTGTCATCGAAATCTACGGACCTGAAAGTTCAGGTAAAACAACTGTTTCTCTTCATGCTATTGCAGAA
GTGCAAGCTTCTGGCGGTACGGCTGCATTCATCGATGCAGAGCACGCGCTTGACCCGGTATATGCGCAGAATCTTGGCGT
AAATATCGATGAGTTGTTATTGTCTCAGCCCGACACAGGTGAACAGGCATTGGAAATCTGTGAAGCATTGGTTCGAAGCG
GCGCAGTGGACATCGTCGTAATTGACTCGGTTGCTGCACTTGTGCCGAAAGCGGAAATCGAAGGGGAAATGGGCGATTCG
CACATGGGCTTGCAAGCCCGTCTGATGTCTCAGGCCCTTCGTAAACTATCAGGTATCATCAATAAGTCGAATTCGATTGT
CATCTTCATCAACCAGGTCCGTGAAAAAATCGGCGTCATGTTCGGTAACCCTGAAACGACGACTGGTGGACGCGCATTGA
AATTCTATTCATCAATCCGTATGGAAGTGCGCCGTGCTGAAGCGTTGAAATCCGGCAACGATATTATCGGTAACAGAACG
AAGATCAAAATTGTCAAAAACAAAGTGGCACCGCCATTCCGTACTGCTGAAGTGGATATCATGTACGGTAAAGGGATTTC
CCGTGAAGGTGAAATCGTTGATATCGGTGCAGAACTTGAAATCATCCAAAAGAGCGGTTCGTGGTATTCTTATAAAGAGG
ACCGTATCGGACAAGGTCGTGAAAACGCCAAGCAATATCTTCGCGATCATGGAGATATCAGCAATGAGATTGCAGGGAAA
ATCCGTGAACAATACGGTATGGCAGCTGCTTCCTATACAATTGCTGCATCAAAAGAAGAGCCGGAAGAGTTTAATCTTTT
GATCGATGAGGACGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

92.635

0.756
  recA Latilactobacillus sakei subsp. sakei 23K

70.115

98.584

0.691
  recA Streptococcus mutans UA159

62.778

100

0.64
  recA Streptococcus pyogenes NZ131

62.994

100

0.632
  recA Acinetobacter baylyi ADP1

62.644

98.584

0.618
  recA Streptococcus mitis NCTC 12261

61.473

100

0.615
  recA Streptococcus mitis SK321

62.682

97.167

0.609
  recA Streptococcus pneumoniae Rx1

64.545

93.484

0.603
  recA Streptococcus pneumoniae D39

64.545

93.484

0.603
  recA Streptococcus pneumoniae R6

64.545

93.484

0.603
  recA Streptococcus pneumoniae TIGR4

64.545

93.484

0.603
  recA Lactococcus lactis subsp. cremoris KW2

64.242

93.484

0.601
  recA Glaesserella parasuis strain SC1401

61.765

96.317

0.595
  recA Acinetobacter baumannii D1279779

60.519

98.3

0.595
  recA Neisseria gonorrhoeae MS11

63.83

93.201

0.595
  recA Neisseria gonorrhoeae MS11

63.83

93.201

0.595
  recA Neisseria gonorrhoeae strain FA1090

63.83

93.201

0.595
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.635

0.592
  recA Helicobacter pylori 26695

60.234

96.884

0.584
  recA Helicobacter pylori strain NCTC11637

60.234

96.884

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

93.201

0.584
  recA Pseudomonas stutzeri DSM 10701

62.31

93.201

0.581
  recA Vibrio cholerae strain A1552

63.24

90.935

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

90.935

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.963

92.351

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

90.652

0.555

Multiple sequence alignment