Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DNR44_RS10765 Genome accession   NZ_CP047673
Coordinates   2156248..2157483 (+) Length   411 a.a.
NCBI ID   WP_112222768.1    Uniprot ID   -
Organism   Planococcus halotolerans strain Y50     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2151248..2162483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS10740 (DNR44_010690) yfmH 2151742..2153046 (+) 1305 WP_135815610.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DNR44_RS10745 (DNR44_010695) ymfI 2153043..2153762 (+) 720 WP_112222771.1 elongation factor P 5-aminopentanone reductase -
  DNR44_RS10750 (DNR44_010700) - 2153873..2154676 (+) 804 WP_112222770.1 YmfK family protein -
  DNR44_RS10755 (DNR44_010705) - 2154691..2155569 (+) 879 WP_338046809.1 helix-turn-helix domain-containing protein -
  DNR44_RS10760 (DNR44_010710) pgsA 2155620..2156198 (+) 579 WP_135815611.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DNR44_RS10765 (DNR44_010715) cinA 2156248..2157483 (+) 1236 WP_112222768.1 competence/damage-inducible protein A Machinery gene
  DNR44_RS10770 (DNR44_010720) recA 2157676..2158737 (+) 1062 WP_112222767.1 recombinase RecA Machinery gene
  DNR44_RS10775 (DNR44_010725) rny 2159063..2160619 (+) 1557 WP_112222766.1 ribonuclease Y -
  DNR44_RS10780 (DNR44_010730) - 2160685..2161482 (+) 798 WP_112223257.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45005.19 Da        Isoelectric Point: 5.0223

>NTDB_id=415185 DNR44_RS10765 WP_112222768.1 2156248..2157483(+) (cinA) [Planococcus halotolerans strain Y50]
MNAEIIAVGSELLLGQITNTNARFVSGHLAEIGINVYYHTVVGDNHDRLEQAIRIAESRADLIIFSGGLGPTKDDLTKET
IARHLGTTLEMDELAMESIEAYFERAKRPMTENNKKQALVLKGSEVLVNENGMAPGMLYKHEGRVYILLPGPPHEIEPMF
QFEAKPKLIHMLNKENVIISHVLRFYGIGEAELEDRLDHILEKQTNPTIAPLASASEVTLRITAKTDTAEEAWQLINETK
KEILEVVGQYLYGYDDDSLTSRAVDLLKEQNKTISAAESLTAGLFQSELASVTGASAVLAGGVIAYNEEIKISQLDIDAE
LLKTYGVVSEQTASAMAENVRKKFGTDYGIGLTGVAGPDAHGGQPAGTVWIGIASESGTDAYRLQLSGMRNTNRIRTVKL
ALHYLIRTLSR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=415185 DNR44_RS10765 WP_112222768.1 2156248..2157483(+) (cinA) [Planococcus halotolerans strain Y50]
ATGAACGCAGAAATTATTGCAGTAGGCTCGGAACTGCTGCTCGGACAAATAACCAATACAAATGCCCGATTTGTGTCTGG
CCACTTGGCTGAAATCGGCATCAACGTTTACTACCATACAGTAGTCGGCGACAATCACGACCGTCTTGAACAGGCAATCC
GGATTGCAGAAAGCCGAGCGGACTTGATCATTTTCTCAGGTGGATTGGGTCCGACAAAAGATGATCTGACTAAAGAGACG
ATTGCAAGACATCTGGGCACCACCCTCGAAATGGACGAACTGGCAATGGAATCGATAGAAGCCTATTTCGAGCGTGCTAA
ACGGCCAATGACTGAAAACAATAAAAAGCAGGCTTTGGTTCTGAAAGGCAGCGAAGTGCTGGTCAATGAAAATGGCATGG
CTCCCGGCATGCTTTATAAACACGAAGGCAGAGTTTACATACTTTTGCCAGGGCCGCCCCATGAAATTGAGCCGATGTTC
CAGTTTGAGGCTAAGCCGAAGCTGATCCATATGCTCAATAAGGAAAATGTAATCATTTCCCATGTTCTCCGTTTTTACGG
CATCGGTGAAGCGGAACTTGAAGACCGTCTTGACCATATTCTTGAAAAACAGACGAACCCGACAATCGCACCTCTGGCTT
CTGCCAGCGAAGTGACATTGCGGATTACTGCGAAGACGGATACTGCAGAAGAAGCCTGGCAATTAATCAATGAGACAAAG
AAAGAAATCCTTGAAGTTGTCGGCCAGTATCTTTATGGCTACGATGATGACTCGCTGACTTCCAGGGCAGTCGATTTGCT
GAAAGAGCAGAATAAGACAATCTCTGCTGCAGAAAGCCTCACAGCTGGCCTGTTTCAATCAGAACTGGCTTCTGTTACGG
GTGCCAGCGCCGTTCTTGCTGGTGGAGTCATTGCGTATAATGAAGAAATTAAAATCAGCCAGCTGGACATTGATGCTGAG
CTTTTGAAAACCTATGGCGTTGTCAGCGAACAGACCGCTTCGGCTATGGCAGAAAATGTCCGGAAAAAGTTTGGCACTGA
TTACGGAATCGGACTGACAGGCGTGGCAGGACCGGATGCACACGGCGGACAGCCGGCCGGAACAGTTTGGATCGGTATTG
CTTCAGAATCGGGAACTGATGCCTATAGACTTCAATTATCCGGCATGCGAAATACGAACCGGATCCGCACCGTCAAACTG
GCGCTGCATTATCTGATACGAACACTTTCCCGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.523

99.513

0.543
  cinA Streptococcus mitis SK321

46.699

99.513

0.465
  cinA Streptococcus mutans UA159

46.455

99.513

0.462
  cinA Streptococcus mitis NCTC 12261

46.867

97.08

0.455
  cinA Streptococcus pneumoniae Rx1

46.366

97.08

0.45
  cinA Streptococcus pneumoniae R6

46.366

97.08

0.45
  cinA Streptococcus pneumoniae TIGR4

46.348

96.594

0.448
  cinA Streptococcus pneumoniae D39

46.115

97.08

0.448
  cinA Streptococcus suis isolate S10

38.265

95.377

0.365

Multiple sequence alignment