Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F7308_RS00545 Genome accession   NC_015696
Coordinates   113468..114541 (+) Length   357 a.a.
NCBI ID   WP_013921901.1    Uniprot ID   A0AAJ4NNS5
Organism   Francisella salina     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108468..119541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7308_RS00515 (F7308_0106) - 108542..110239 (-) 1698 WP_013921895.1 alpha-keto acid decarboxylase family protein -
  F7308_RS00520 (F7308_0107) - 110401..110757 (-) 357 WP_013921896.1 ferredoxin -
  F7308_RS00525 (F7308_0108) - 110845..111768 (+) 924 WP_013921897.1 S49 family peptidase -
  F7308_RS00530 (F7308_0109) - 111860..112399 (+) 540 WP_013921898.1 OmpH family outer membrane protein -
  F7308_RS00535 (F7308_0110) - 112550..112972 (+) 423 WP_013921899.1 rhodanese-like domain-containing protein -
  F7308_RS00540 (F7308_0111) secB 112992..113441 (+) 450 WP_013921900.1 protein-export chaperone SecB -
  F7308_RS00545 (F7308_0112) recA 113468..114541 (+) 1074 WP_013921901.1 recombinase RecA Machinery gene
  F7308_RS00550 (F7308_0113) - 114528..114983 (+) 456 WP_013921902.1 regulatory protein RecX -
  F7308_RS00555 (F7308_0114) ssb 115060..115548 (+) 489 WP_013921903.1 single-stranded DNA-binding protein Machinery gene
  F7308_RS00560 (F7308_0115) - 115649..116803 (+) 1155 WP_041263570.1 acetate/propionate family kinase -
  F7308_RS00565 (F7308_0116) pta 116813..118909 (+) 2097 WP_013921905.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38730.48 Da        Isoelectric Point: 6.0182

>NTDB_id=41512 F7308_RS00545 WP_013921901.1 113468..114541(+) (recA) [Francisella salina]
MSKEKALESALSQIEKQFGKGSIMRLGDQETAHDIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLAIAQ
CQKQGGTAAFVDAEHALDPKYAKLLGVNVDDLIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYASVRLEVRKGGAIKDGVDVNGNEI
KVKIVKNKVAPPFKQAEFELIYGEGISLEAELIDLGAKHGIVEKSGAWYSYKGKKIGQGKEKSKDYLKENTVERDEIEKA
LLELLLPHKYAVEEQPQEESKPAKQSKSKQATQDELI

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=41512 F7308_RS00545 WP_013921901.1 113468..114541(+) (recA) [Francisella salina]
ATGAGTAAAGAAAAAGCTCTAGAGTCAGCGCTCTCACAGATTGAGAAGCAGTTTGGTAAAGGCTCTATTATGAGATTGGG
TGATCAAGAGACAGCTCATGATATAGATGTTATCCCTTCAGGTATTATTGCTCTTGATGTTGCATTGGGCATAGGAGGGT
ATCCTAAAGGGCGTATTATTGAAATATATGGACATGAATCATCTGGTAAGACTACGCTTACTCTCTTAGCAATTGCACAG
TGCCAAAAACAAGGTGGTACAGCAGCCTTTGTTGATGCAGAACATGCTCTAGATCCTAAGTATGCTAAGCTTTTGGGTGT
AAATGTAGATGATCTGATAGTTTCTCAGCCAGATACCGGTGAGCAGGCATTAGAGATTGCAGATATGTTAGTTCGTTCTG
GAGGAGTTGATATTGTAGTAATAGACTCTGTTGCAGCACTCACTCCTAAGGCAGAGATTGAAGGTGATATGGGAGACTCT
CACATGGGCCTTCAGGCAAGACTAATGTCTCAAGCGCTTAGAAAATTAACAGCAAATATCAAACGCTCAAACACTTTGGT
AATGTTCATTAACCAAATACGTATGAAAATCGGGGTAATGTTTGGCAATCCTGAAACTACCACTGGTGGTAATGCTCTTA
AGTTTTATGCTTCTGTTAGGTTAGAAGTTAGAAAGGGTGGAGCTATTAAAGATGGTGTAGATGTTAATGGTAATGAAATA
AAAGTTAAAATTGTTAAAAATAAGGTTGCTCCTCCATTTAAGCAAGCTGAGTTTGAGCTCATTTATGGAGAAGGTATCTC
GCTTGAAGCAGAACTTATTGACCTTGGTGCTAAACATGGAATTGTAGAGAAGTCTGGCGCTTGGTATAGCTATAAAGGTA
AAAAGATTGGTCAAGGTAAAGAAAAATCAAAAGATTACCTTAAAGAAAATACAGTAGAACGTGATGAGATAGAAAAAGCT
CTTTTGGAACTTTTATTGCCACATAAATATGCTGTAGAAGAACAACCTCAAGAAGAGTCTAAACCTGCAAAGCAATCTAA
GTCGAAACAAGCTACACAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.862

95.518

0.639
  recA Acinetobacter baumannii D1279779

65.982

95.518

0.63
  recA Acinetobacter baylyi ADP1

65.689

95.518

0.627
  recA Vibrio cholerae strain A1552

68.615

91.036

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.615

91.036

0.625
  recA Glaesserella parasuis strain SC1401

66.97

92.437

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.536

89.916

0.616
  recA Neisseria gonorrhoeae strain FA1090

68.323

90.196

0.616
  recA Neisseria gonorrhoeae MS11

68.323

90.196

0.616
  recA Neisseria gonorrhoeae MS11

68.323

90.196

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

69.156

86.275

0.597
  recA Ralstonia pseudosolanacearum GMI1000

67.949

87.395

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

91.877

0.583
  recA Streptococcus mutans UA159

57.983

100

0.58
  recA Streptococcus pneumoniae Rx1

63.863

89.916

0.574
  recA Streptococcus pneumoniae TIGR4

63.863

89.916

0.574
  recA Streptococcus pneumoniae R6

63.863

89.916

0.574
  recA Streptococcus pneumoniae D39

63.863

89.916

0.574
  recA Streptococcus mitis NCTC 12261

64.062

89.636

0.574
  recA Helicobacter pylori strain NCTC11637

64.241

88.515

0.569
  recA Streptococcus mitis SK321

64.744

87.395

0.566
  recA Helicobacter pylori 26695

63.924

88.515

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.347

94.398

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

91.036

0.557
  recA Streptococcus pyogenes NZ131

61.682

89.916

0.555
  recA Lactococcus lactis subsp. cremoris KW2

60.625

89.636

0.543

Multiple sequence alignment