Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7308_RS00555 Genome accession   NC_015696
Coordinates   115060..115548 (+) Length   162 a.a.
NCBI ID   WP_013921903.1    Uniprot ID   -
Organism   Francisella salina     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 110060..120548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7308_RS00520 (F7308_0107) - 110401..110757 (-) 357 WP_013921896.1 ferredoxin -
  F7308_RS00525 (F7308_0108) - 110845..111768 (+) 924 WP_013921897.1 S49 family peptidase -
  F7308_RS00530 (F7308_0109) - 111860..112399 (+) 540 WP_013921898.1 OmpH family outer membrane protein -
  F7308_RS00535 (F7308_0110) - 112550..112972 (+) 423 WP_013921899.1 rhodanese-like domain-containing protein -
  F7308_RS00540 (F7308_0111) secB 112992..113441 (+) 450 WP_013921900.1 protein-export chaperone SecB -
  F7308_RS00545 (F7308_0112) recA 113468..114541 (+) 1074 WP_013921901.1 recombinase RecA Machinery gene
  F7308_RS00550 (F7308_0113) - 114528..114983 (+) 456 WP_013921902.1 regulatory protein RecX -
  F7308_RS00555 (F7308_0114) ssb 115060..115548 (+) 489 WP_013921903.1 single-stranded DNA-binding protein Machinery gene
  F7308_RS00560 (F7308_0115) - 115649..116803 (+) 1155 WP_041263570.1 acetate/propionate family kinase -
  F7308_RS00565 (F7308_0116) pta 116813..118909 (+) 2097 WP_013921905.1 phosphate acetyltransferase -
  F7308_RS00570 (F7308_0117) - 118925..120358 (+) 1434 WP_013921906.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17946.69 Da        Isoelectric Point: 5.8631

>NTDB_id=41513 F7308_RS00555 WP_013921903.1 115060..115548(+) (ssb) [Francisella salina]
MAKGTVNKVILLGRLGNDPEVRTTQNGTTVATLSIATNDGMGENITTEWHRVVVFGKSAEAIQRYANKGTQLFIEGRLRT
NKWQDKNGNMQYTTEVVVSNFQFVGGGNSQGSSNYQNNPNPNFNQQPNNSFAQNNQQPAPKQDKMPDFAEINSSNFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=41513 F7308_RS00555 WP_013921903.1 115060..115548(+) (ssb) [Francisella salina]
ATGGCCAAAGGAACAGTAAATAAGGTTATTTTGTTGGGTAGATTAGGTAATGATCCAGAAGTTAGAACTACTCAAAACGG
TACTACAGTAGCTACACTAAGTATCGCAACTAATGATGGTATGGGTGAAAATATAACCACTGAGTGGCATAGAGTTGTTG
TGTTTGGTAAGTCTGCAGAGGCTATCCAAAGATATGCAAATAAAGGTACACAACTTTTTATAGAAGGTAGGCTTCGTACT
AACAAGTGGCAAGATAAAAACGGTAATATGCAATATACTACAGAAGTTGTTGTTAGTAATTTCCAGTTTGTTGGTGGTGG
TAATTCTCAGGGTAGTTCAAACTACCAAAACAACCCTAATCCCAACTTTAATCAACAGCCTAATAATAGTTTTGCTCAAA
ATAATCAGCAACCAGCACCAAAACAGGATAAAATGCCTGATTTTGCTGAGATTAATTCATCAAACTTTGATGATGATATA
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.82

100

0.481
  ssb Glaesserella parasuis strain SC1401

43.82

100

0.481
  ssb Neisseria gonorrhoeae MS11

33.702

100

0.377
  ssb Neisseria meningitidis MC58

34.463

100

0.377

Multiple sequence alignment