Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GTQ55_RS05725 Genome accession   NZ_CP047491
Coordinates   1363266..1364309 (+) Length   347 a.a.
NCBI ID   WP_161857874.1    Uniprot ID   A0A6P1T9N5
Organism   Microbulbifer hydrolyticus strain IRE-31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1358266..1369309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ55_RS05710 (GTQ55_05710) - 1359339..1361441 (+) 2103 WP_237567842.1 prolyl oligopeptidase family serine peptidase -
  GTQ55_RS05715 (GTQ55_05715) - 1361625..1362521 (+) 897 WP_161857872.1 MaoC family dehydratase -
  GTQ55_RS05720 (GTQ55_05720) - 1362604..1363116 (+) 513 WP_161857873.1 CinA family protein -
  GTQ55_RS05725 (GTQ55_05725) recA 1363266..1364309 (+) 1044 WP_161857874.1 recombinase RecA Machinery gene
  GTQ55_RS05730 (GTQ55_05730) - 1364312..1364953 (+) 642 WP_237567843.1 regulatory protein RecX -
  GTQ55_RS05735 (GTQ55_05735) glpK 1365017..1366504 (+) 1488 WP_161857875.1 glycerol kinase GlpK -
  GTQ55_RS05740 (GTQ55_05740) - 1366620..1367489 (+) 870 WP_161857876.1 alpha/beta hydrolase -
  GTQ55_RS05745 (GTQ55_05745) - 1367636..1367824 (+) 189 WP_161860031.1 Trm112 family protein -
  GTQ55_RS05750 (GTQ55_05750) - 1367876..1368238 (+) 363 WP_161857877.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37349.71 Da        Isoelectric Point: 5.0504

>NTDB_id=413773 GTQ55_RS05725 WP_161857874.1 1363266..1364309(+) (recA) [Microbulbifer hydrolyticus strain IRE-31]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERVRIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQILYGEGINMLGEIIDYGVKMGLVDKAGAWYSYKGDKIGQGKANAVKFLKENTDIRNDIES
QLRAQLLGDVTDAKPDAQPEALEAAED

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=413773 GTQ55_RS05725 WP_161857874.1 1363266..1364309(+) (recA) [Microbulbifer hydrolyticus strain IRE-31]
ATGGATTCCAACAAAGACAAGGCTTTACAGGCGGCGCTGTCACAGATCGAGCGTCAGTTCGGCAAGGGCACCGTCATGCG
CATGGGGGATAAAGAGCGTGTGCGTATCCCCGCGATCTCCACCGGCTCCCTGGGCCTGGATGTGGCGCTGGGTATTGGCG
GTCTGCCCCGCGGGCGTATTGTTGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGACCCTTCAGGTTATCGCG
GAGGCCCAGCGCAAGGGCGGCACCTGTGCCTTTGTGGACGCGGAGCACGCACTGGACCCGATTTACGCCGAGAAGCTCGG
CGTAAATGTTGATGAACTGATTGTGTCCCAGCCGGATACCGGTGAGCAGGCACTGGAAGTGGCCGATATGCTGGTGCGCT
CCGGTGCCGTGGATGTGCTGGTTGTGGACTCCGTGGCGGCACTGACGCCGCGTGCGGAGATTGAAGGCGAGATGGGCGAT
TCCCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACCGGTAACATCAAGAACACCAACACCCT
CTGCGTATTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTTGGTTCGCCCGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACTCCTCCGTACGCCTGGATATCCGTCGTATCGGCGCGGTGAAAGAGGGTGACGAAGTGGTTGGTAACGAA
ACGCGTGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAACAGACCGAATTCCAGATCCTGTACGGTGAAGGCAT
CAATATGCTGGGTGAAATCATCGACTACGGCGTGAAGATGGGGCTGGTGGACAAAGCCGGAGCCTGGTACAGCTACAAGG
GCGACAAGATCGGCCAGGGCAAGGCCAACGCGGTCAAGTTCCTGAAGGAAAATACCGATATCCGCAACGACATTGAGTCC
CAGCTGCGGGCCCAGCTTCTGGGTGATGTGACGGACGCAAAGCCGGACGCACAGCCGGAAGCGCTGGAAGCTGCGGAAGA
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1T9N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.613

99.712

0.784
  recA Acinetobacter baylyi ADP1

70.774

100

0.712
  recA Acinetobacter baumannii D1279779

74.312

94.236

0.7
  recA Vibrio cholerae strain A1552

74.006

94.236

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

94.236

0.697
  recA Neisseria gonorrhoeae MS11

72.308

93.66

0.677
  recA Neisseria gonorrhoeae MS11

72.308

93.66

0.677
  recA Neisseria gonorrhoeae strain FA1090

72.308

93.66

0.677
  recA Glaesserella parasuis strain SC1401

71.429

92.795

0.663
  recA Ralstonia pseudosolanacearum GMI1000

71.207

93.084

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

94.236

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.507

0.605
  recA Helicobacter pylori strain NCTC11637

62.997

94.236

0.594
  recA Helicobacter pylori 26695

62.385

94.236

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.389

0.588
  recA Streptococcus mutans UA159

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

92.219

0.568
  recA Streptococcus pneumoniae Rx1

59.146

94.524

0.559
  recA Streptococcus mitis NCTC 12261

59.146

94.524

0.559
  recA Streptococcus pneumoniae D39

59.146

94.524

0.559
  recA Streptococcus pneumoniae R6

59.146

94.524

0.559
  recA Streptococcus pneumoniae TIGR4

59.146

94.524

0.559
  recA Streptococcus mitis SK321

58.841

94.524

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

93.084

0.548
  recA Streptococcus pyogenes NZ131

58.025

93.372

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.055

93.948

0.536

Multiple sequence alignment