Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GT360_RS12310 Genome accession   NZ_CP047475
Coordinates   2649275..2650315 (-) Length   346 a.a.
NCBI ID   WP_164649155.1    Uniprot ID   A0A7Z2YEB5
Organism   Vibrio astriarenae strain HN897     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2644275..2655315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS12290 (GT360_12300) csrA 2644451..2644648 (-) 198 WP_164649151.1 carbon storage regulator CsrA -
  GT360_RS12295 (GT360_12305) - 2644725..2645903 (-) 1179 WP_164649152.1 aspartate kinase -
  GT360_RS12300 (GT360_12310) alaS 2646085..2648667 (-) 2583 WP_164649153.1 alanine--tRNA ligase -
  GT360_RS12305 (GT360_12315) recX 2648743..2649201 (-) 459 WP_164649154.1 recombination regulator RecX -
  GT360_RS12310 (GT360_12320) recA 2649275..2650315 (-) 1041 WP_164649155.1 recombinase RecA Machinery gene
  GT360_RS12315 (GT360_12325) pncC 2650449..2650949 (-) 501 WP_164649156.1 nicotinamide-nucleotide amidase -
  GT360_RS12320 (GT360_12330) mutS 2651034..2653601 (+) 2568 WP_164649157.1 DNA mismatch repair protein MutS -
  GT360_RS12325 (GT360_12335) rpoS 2653676..2654671 (-) 996 WP_164649158.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37167.60 Da        Isoelectric Point: 4.9477

>NTDB_id=413621 GT360_RS12310 WP_164649155.1 2649275..2650315(-) (recA) [Vibrio astriarenae strain HN897]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGKFLRENPEAAQTIDA
KLREMLLTPAQPEAPETGEMPQEEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=413621 GT360_RS12310 WP_164649155.1 2649275..2650315(-) (recA) [Vibrio astriarenae strain HN897]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAGATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGACAACCGCGCAATGGACGTTGAAACGATTTCTACTGGCTCACTGTCTTTGGACATCGCACTTGGTGCTGGTG
GCCTTCCAATGGGCCGTATCGTTGAGATCTACGGTCCAGAATCATCAGGTAAAACAACACTGACTCTAGAGCTTATCGCT
GCCGCGCAGAAAGTGGGTAAAACGTGTGCGTTCGTTGATGCAGAGCACGCTCTTGACCCTATTTATGCACAAAAGCTAGG
CGTTGATATTGATGCGCTGTTGGTTTCTCAACCAGACACGGGCGAGCAAGCGTTAGAAATCTGTGATGCGTTGGCACGCT
CTGGTGCAATCGATGTTCTTGTTGTCGACTCTGTTGCAGCACTAACTCCAAAAGCTGAAATCGAAGGTGAGATGGGCGAC
AGCCACATGGGTCTGCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACAGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACCACTGGCGGTAATGCAC
TGAAATTCTACGCTTCTGTTCGCCTTGATATCCGTCGTACGGGCTCTATCAAAGACGGTGACGAAGTTGTGGGTAACGAA
ACTCGCATCAAAGTGGTTAAGAACAAGATTGCGGCGCCGTTCAAACAAGCTGAAACGCAAATTCTTTACGGCCAAGGCTT
TAACCGCGAAGGTGAGCTTATTGACCTAGGCGTTAAGCACAAGCTGATTGAAAAGGCGGGTGCATGGTACAGCTACAACG
GTGACAAAATTGGTCAAGGTAAAGCCAACGCAGGTAAGTTCCTACGTGAGAACCCAGAAGCGGCTCAAACGATTGATGCT
AAATTGCGCGAAATGCTGCTAACACCAGCACAACCAGAAGCACCTGAAACGGGTGAAATGCCTCAAGAAGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YEB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.793

95.087

0.873
  recA Vibrio cholerae strain A1552

91.793

95.087

0.873
  recA Pseudomonas stutzeri DSM 10701

73.529

98.266

0.723
  recA Acinetobacter baylyi ADP1

71.387

100

0.714
  recA Acinetobacter baumannii D1279779

74.085

94.798

0.702
  recA Neisseria gonorrhoeae MS11

68.195

100

0.688
  recA Neisseria gonorrhoeae MS11

68.195

100

0.688
  recA Neisseria gonorrhoeae strain FA1090

68.195

100

0.688
  recA Glaesserella parasuis strain SC1401

70.988

93.642

0.665
  recA Ralstonia pseudosolanacearum GMI1000

71.746

91.04

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.665

0.581
  recA Helicobacter pylori 26695

61.162

94.509

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.775

0.578
  recA Streptococcus mutans UA159

61.538

93.931

0.578
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Helicobacter pylori strain NCTC11637

60.856

94.509

0.575
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Streptococcus mitis SK321

61.3

93.353

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

91.618

0.569
  recA Streptococcus pyogenes NZ131

60.615

93.931

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.775

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.353

0.549

Multiple sequence alignment