Detailed information NTG0413623

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GT360_RS12325
• Genome accession: NZ_CP047475
• Coordinates: 2653676..2654671 (-)
• Length: 331 a.a.
• NCBI ID: WP_164649158.1
• Uniprot ID: A0A7Z2YEM1
• Organism: Vibrio astriarenae strain HN897
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2648676..2659671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GT360_RS12305 (GT360_12315)	recX	2648743..2649201 (-)	459	WP_164649154.1	recombination regulator RecX	-
GT360_RS12310 (GT360_12320)	recA	2649275..2650315 (-)	1041	WP_164649155.1	recombinase RecA	Machinery gene
GT360_RS12315 (GT360_12325)	pncC	2650449..2650949 (-)	501	WP_164649156.1	nicotinamide-nucleotide amidase	-
GT360_RS12320 (GT360_12330)	mutS	2651034..2653601 (+)	2568	WP_164649157.1	DNA mismatch repair protein MutS	-
GT360_RS12325 (GT360_12335)	rpoS	2653676..2654671 (-)	996	WP_164649158.1	RNA polymerase sigma factor RpoS	Regulator
GT360_RS12330 (GT360_12340)	nlpD	2654750..2655685 (-)	936	WP_164649159.1	murein hydrolase activator NlpD	-
GT360_RS12335 (GT360_12345)	-	2655688..2656314 (-)	627	WP_164649160.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GT360_RS12340 (GT360_12350)	surE	2656314..2657057 (-)	744	WP_164649161.1	5'/3'-nucleotidase SurE	-
GT360_RS12345 (GT360_12355)	truD	2657057..2658115 (-)	1059	WP_164649162.1	tRNA pseudouridine(13) synthase TruD	-
GT360_RS12350 (GT360_12360)	ispF	2658118..2658600 (-)	483	WP_204274572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GT360_RS12355 (GT360_12365)	ispD	2658610..2659314 (-)	705	WP_164649164.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GT360_RS12360 (GT360_12370)	ftsB	2659328..2659612 (-)	285	WP_164649165.1	cell division protein FtsB	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37807.64 Da
• Isoelectric Point: 4.6526

>NTDB_id=413623 GT360_RS12325 WP_164649158.1 2653676..2654671(-) (rpoS) [Vibrio astriarenae strain HN897]
MSISNTAAKVEDFELDSEVETTLEQDNETTSSESVVGKDSQKEEFEASTKSLDATQLYLSEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNVYLRTARELSQKLDHEPTAEEIATQLDKPVGDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDAVH
ADPEVSTQDDDIKHSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLN
MENLFSFDDEQ

Nucleotide

• Length: 996 bp

>NTDB_id=413623 GT360_RS12325 WP_164649158.1 2653676..2654671(-) (rpoS) [Vibrio astriarenae strain HN897]
ATGAGTATCAGCAACACAGCAGCAAAAGTAGAAGATTTCGAGCTTGATTCAGAAGTGGAAACCACTCTAGAACAAGACAA
TGAAACCACTTCATCTGAATCGGTCGTTGGCAAGGATTCCCAAAAAGAGGAATTTGAAGCATCCACTAAGAGTCTGGATG
CCACTCAGCTGTACTTGAGTGAAATCGGCTTTTCTCCACTATTAACGGCAGAAGAAGAAGTATTGTACGCCCGCCGCGCA
CTTCGAGGTGATGAAGCAGCACGCAAGCGTATGATCGAAAGTAACCTTCGTCTAGTCGTTAAAATTTCTCGTCGCTATAG
CAATCGTGGTCTGGCTCTGCTTGATTTGATTGAAGAGGGCAACTTAGGTTTGATCCGAGCGGTAGAGAAGTTTGACCCAG
AACGCGGTTTCCGTTTCTCAACTTATGCTACTTGGTGGATTCGTCAAACCATCGAGCGTGCCTTGATGAACCAAACCCGC
ACTATTCGCCTACCTATTCACGTAGTGAAAGAGCTGAACGTTTACTTGCGTACCGCACGTGAGCTGTCTCAGAAGCTTGA
CCATGAACCGACCGCAGAAGAGATTGCCACCCAGCTTGATAAGCCCGTTGGTGATGTCAGCAAGATGCTGCGTCTCAATG
AGCGCGTGAGTTCGGTTGATACGCCAATTGGCGGCGATGGCGATAAGGCGCTACTGGATATTATCCCTGATGCGGTACAC
GCTGATCCGGAAGTGTCTACGCAAGACGATGATATCAAGCACTCGCTGCTTCATTGGCTTGATGAACTCAACCCTAAACA
GAAAGAGGTGCTCGCACGTCGTTTTGGTCTTTTAGGTTATGAGCCATCAACGCTGGAAGAGGTGGGGCGCGAAATCAGTC
TCACTCGTGAGCGTGTACGTCAGATCCAAGTTGAAGGTCTGCGCCGTTTGCGCGAGATCCTTATCAAACAAGGCTTGAAT
ATGGAAAATCTGTTCAGCTTTGATGATGAACAGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

3D structure

• AlphaFold DB: A0A7Z2YEM1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.735	100	0.84