Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GSN03_RS18000 Genome accession   NZ_CP047366
Coordinates   3534316..3535347 (-) Length   343 a.a.
NCBI ID   WP_001283855.1    Uniprot ID   A0A2B0EN55
Organism   Bacillus nitratireducens strain BM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3529316..3540347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS17980 (GSN03_17815) - 3529912..3530835 (-) 924 WP_212087839.1 dipeptidase -
  GSN03_RS17985 (GSN03_17820) spoVS 3530895..3531155 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  GSN03_RS17990 (GSN03_17825) - 3531305..3532099 (-) 795 WP_001221088.1 TIGR00282 family metallophosphoesterase -
  GSN03_RS17995 (GSN03_17830) rny 3532271..3533833 (-) 1563 WP_000099777.1 ribonuclease Y -
  GSN03_RS18000 (GSN03_17835) recA 3534316..3535347 (-) 1032 WP_001283855.1 recombinase RecA Machinery gene
  GSN03_RS18005 (GSN03_17840) cinA 3535490..3536728 (-) 1239 WP_212087841.1 competence/damage-inducible protein A Machinery gene
  GSN03_RS18010 (GSN03_17845) pgsA 3536750..3537328 (-) 579 WP_212087842.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GSN03_RS18015 (GSN03_17850) - 3537392..3538318 (-) 927 WP_212091619.1 helix-turn-helix domain-containing protein -
  GSN03_RS18020 (GSN03_17855) - 3538340..3539125 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GSN03_RS18025 (GSN03_17860) - 3539265..3539513 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  GSN03_RS18030 (GSN03_17865) ymfI 3539589..3540302 (-) 714 WP_000759587.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37356.31 Da        Isoelectric Point: 4.9093

>NTDB_id=413040 GSN03_RS18000 WP_001283855.1 3534316..3535347(-) (recA) [Bacillus nitratireducens strain BM02]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGEDSGVEDTEDSTLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=413040 GSN03_RS18000 WP_001283855.1 3534316..3535347(-) (recA) [Bacillus nitratireducens strain BM02]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTAGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATCGCGGAA
GTACAGCGACAAGGTGGACAAGCAGCATTTATCGATGCGGAGCATGCGATGGATCCTGTTTATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGAGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTGCGTCGTGCTGAGCAGTTAAAACAAGGTAACGACATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAAAATAAAGTAGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTGCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAGAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGAACATCATGGAATTGGTGAAGACTCTGGTGTTGAAGACACGGAAGATTCAACCCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B0EN55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.787

97.085

0.843
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.335

0.726
  recA Streptococcus pneumoniae D39

68.222

100

0.682
  recA Streptococcus pneumoniae Rx1

68.222

100

0.682
  recA Streptococcus pneumoniae R6

68.222

100

0.682
  recA Streptococcus pneumoniae TIGR4

68.222

100

0.682
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.262

97.959

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

98.251

0.627
  recA Ralstonia pseudosolanacearum GMI1000

68.051

91.254

0.621
  recA Acinetobacter baumannii D1279779

60.526

99.708

0.603
  recA Helicobacter pylori 26695

62.614

95.918

0.601
  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

95.335

0.598
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Glaesserella parasuis strain SC1401

63.636

93.003

0.592
  recA Acinetobacter baylyi ADP1

62.112

93.878

0.583
  recA Pseudomonas stutzeri DSM 10701

62.187

93.294

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

92.128

0.56

Multiple sequence alignment