Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GSN03_RS18005 Genome accession   NZ_CP047366
Coordinates   3535490..3536728 (-) Length   412 a.a.
NCBI ID   WP_212087841.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3530490..3541728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS17985 (GSN03_17820) spoVS 3530895..3531155 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  GSN03_RS17990 (GSN03_17825) - 3531305..3532099 (-) 795 WP_001221088.1 TIGR00282 family metallophosphoesterase -
  GSN03_RS17995 (GSN03_17830) rny 3532271..3533833 (-) 1563 WP_000099777.1 ribonuclease Y -
  GSN03_RS18000 (GSN03_17835) recA 3534316..3535347 (-) 1032 WP_001283855.1 recombinase RecA Machinery gene
  GSN03_RS18005 (GSN03_17840) cinA 3535490..3536728 (-) 1239 WP_212087841.1 competence/damage-inducible protein A Machinery gene
  GSN03_RS18010 (GSN03_17845) pgsA 3536750..3537328 (-) 579 WP_212087842.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GSN03_RS18015 (GSN03_17850) - 3537392..3538318 (-) 927 WP_212091619.1 helix-turn-helix domain-containing protein -
  GSN03_RS18020 (GSN03_17855) - 3538340..3539125 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GSN03_RS18025 (GSN03_17860) - 3539265..3539513 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  GSN03_RS18030 (GSN03_17865) ymfI 3539589..3540302 (-) 714 WP_000759587.1 elongation factor P 5-aminopentanone reductase -
  GSN03_RS18035 (GSN03_17870) yfmH 3540419..3541705 (-) 1287 WP_212087843.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45617.89 Da        Isoelectric Point: 5.1181

>NTDB_id=413041 GSN03_RS18005 WP_212087841.1 3535490..3536728(-) (cinA) [Bacillus nitratireducens strain BM02]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDETALTSISDYFKRTGREFTENNKKQALVLSGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDANEAEKLIQHVEN
LILERVGEFFYGYDQDFLHYKAIELLKQKGLTLACAESLTGGLFGNQVTENEGVSSVFKGGVVCYQNEVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEYKEPGTVFVGLVIKDEPTEVFPLNLSGSRQQIRERSTKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=413041 GSN03_RS18005 WP_212087841.1 3535490..3536728(-) (cinA) [Bacillus nitratireducens strain BM02]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTGTTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATAAATGTGTACTATCATACTGTTGTGGGTGATAATAACAAGCGATTACAAAAGGCAATTG
AATTGGCTGAAGAGCGCGCTGATATGCTTATTTTTACAGGCGGATTAGGGCCGACAAAAGACGATTTGACGAAAGAAACA
ATAGCGTCTAGCTTAGGTGAAGAGCTTGTGTATGATGAAACAGCATTAACATCCATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAAAATAATAAAAAGCAGGCGCTCGTTCTAAGTGGTTCGACTGTATTTGCGAATGATCACGGTATGG
CACCTGGCATGGGGTTAAATAAAAACGGAAAAGTTTATATTTTATTACCAGGGCCACCAAAAGAAATGAAGCCGATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAACTTTACAACAGGGGAAAATATTTATTCTCGCGTTCTTCGCTTTTTCGGTAT
TGGGGAATCTCAATTAGAGGTAAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACCATTGCACCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCAAAACATCATGATGCGAATGAGGCGGAGAAACTAATTCAACATGTGGAAAAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTTCTTCATTACAAGGCAATAGAGTTATTGAA
GCAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGCGGTCTCTTTGGAAATCAAGTAACAGAAAATGAGGGTG
TTTCGTCTGTGTTTAAAGGCGGTGTCGTTTGTTATCAAAATGAAGTAAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGACGGCGCGGTTAGTAAACAATGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGAATTAGTTTTACTGGGGTGGCAGGACCTGATGCTTCAGAGTATAAAGAACCAGGAACAGTATTTGTTGGATTGGTGA
TTAAGGATGAACCGACTGAAGTCTTCCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAGCGCTCTACAAAATAT
GGGTTTTATCATTTATACAAAAAACTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.515

0.587
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.483
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.478
  cinA Streptococcus pneumoniae R6

47.017

100

0.478
  cinA Streptococcus pneumoniae D39

46.778

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.489

91.262

0.379

Multiple sequence alignment