Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GEOTH_RS12890 Genome accession   NC_015660
Coordinates   2559189..2560241 (-) Length   350 a.a.
NCBI ID   WP_003251602.1    Uniprot ID   A0AAN0YN71
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2554189..2565241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS12870 (Geoth_2620) - 2554869..2555792 (-) 924 WP_013877190.1 dipeptidase -
  GEOTH_RS12875 (Geoth_2621) spoVS 2555880..2556140 (-) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  GEOTH_RS12880 (Geoth_2622) - 2556267..2557061 (-) 795 WP_013401237.1 TIGR00282 family metallophosphoesterase -
  GEOTH_RS12885 (Geoth_2623) rny 2557145..2558710 (-) 1566 WP_003251600.1 ribonuclease Y -
  GEOTH_RS12890 (Geoth_2624) recA 2559189..2560241 (-) 1053 WP_003251602.1 recombinase RecA Machinery gene
  GEOTH_RS12895 (Geoth_2625) cinA 2560404..2561651 (-) 1248 WP_013877191.1 competence/damage-inducible protein A Machinery gene
  GEOTH_RS12900 (Geoth_2626) pgsA 2561748..2562326 (-) 579 WP_003251605.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GEOTH_RS12905 (Geoth_2627) - 2562382..2563266 (-) 885 WP_013877192.1 helix-turn-helix domain-containing protein -
  GEOTH_RS12910 (Geoth_2628) - 2563291..2564082 (-) 792 WP_003251609.1 DUF3388 domain-containing protein -
  GEOTH_RS12915 (Geoth_2629) - 2564223..2564471 (-) 249 WP_003251611.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38109.29 Da        Isoelectric Point: 5.2095

>NTDB_id=41271 GEOTH_RS12890 WP_003251602.1 2559189..2560241(-) (recA) [Parageobacillus thermoglucosidasius C56-YS93]
MNQDRQAALEQALKQIERQFGKGSIMRLGEQTDRKISTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNEMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQ
EIRKHYGIESPSSSNGANELQQEEFGLLEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=41271 GEOTH_RS12890 WP_003251602.1 2559189..2560241(-) (recA) [Parageobacillus thermoglucosidasius C56-YS93]
GTGAATCAAGATCGTCAAGCTGCCTTGGAACAGGCGTTAAAACAGATCGAAAGGCAATTTGGAAAAGGCTCGATCATGAG
ACTTGGAGAGCAAACGGATCGTAAAATATCGACCGTGTCAAGCGGATCGCTTGCGCTCGATATCGCTTTAGGTGTTGGCG
GATATCCGCGCGGCCGCATTATTGAAATATATGGGCCTGAGTCTTCCGGGAAAACAACGGTTGCGCTCCACGCGATCGCC
GAAGTCCAGAAACAAGGCGGACAAGCCGCATTTATCGACGCAGAGCACGCGCTTGATCCGATTTATGCGCAAAAATTAGG
CGTGAACATTGATGAATTGCTGCTTTCCCAGCCGGATACAGGAGAGCAGGCGCTCGAAATTGCCGAGGCGCTGGTAAGAA
GCGGCGCGGTTGATATTATCGTGATTGACTCTGTCGCGGCGCTCGTGCCGAAAGCGGAAATTGAAGGGGAAATGGGCGAC
GCACACGTTGGTTTGCAGGCCCGCCTCATGTCGCAAGCATTGCGCAAATTATCCGGAGCGATTAACAAATCAAAAGCGAT
TGCGATTTTCATCAACCAAATTCGCGAAAAAGTCGGTGTGATGTTCGGAAATCCGGAGACAACTCCAGGCGGCCGCGCGT
TAAAATTTTATGCTTCGGTCCGTCTTGAGGTGCGCCGTGCCGAACAAATAAAACAAGGCAACGAGATGGTCGGAAATAAA
ACGAAAATTAAAGTCGTGAAAAATAAAGTTGCCCCTCCATTTAAAACGGCGGACGTAGATATTATGTATGGGGAAGGCAT
TTCCCGCGAAGGCGAAATTATTGATATGGCTTCCGAGTTAGATATCGTGCAAAAAAGCGGATCCTGGTATTCATATAAAG
ACGAGCGCTTAGGCCAAGGCCGCGAAAATGCGAAACAATTTTTAAAAGAAAATCCGCATATCGCTGAAGAAATTGCCCAA
GAAATTCGCAAACACTACGGGATTGAGTCTCCTTCAAGCTCGAATGGCGCAAACGAGCTGCAACAGGAGGAATTCGGACT
TTTGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

93.429

0.809
  recA Latilactobacillus sakei subsp. sakei 23K

77.231

92.857

0.717
  recA Streptococcus pneumoniae Rx1

71.429

94

0.671
  recA Streptococcus pneumoniae D39

71.429

94

0.671
  recA Streptococcus pneumoniae R6

71.429

94

0.671
  recA Streptococcus mitis NCTC 12261

71.429

94

0.671
  recA Streptococcus pneumoniae TIGR4

71.429

94

0.671
  recA Streptococcus mitis SK321

71.125

94

0.669
  recA Streptococcus pyogenes NZ131

66.954

99.429

0.666
  recA Streptococcus mutans UA159

69.605

94

0.654
  recA Lactococcus lactis subsp. cremoris KW2

68.693

94

0.646
  recA Ralstonia pseudosolanacearum GMI1000

66.159

93.714

0.62
  recA Acinetobacter baumannii D1279779

63.081

98.286

0.62
  recA Acinetobacter baylyi ADP1

61.605

99.714

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.848

94.286

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.741

92.571

0.609
  recA Vibrio cholerae strain A1552

65.741

92.571

0.609
  recA Glaesserella parasuis strain SC1401

61.207

99.429

0.609
  recA Pseudomonas stutzeri DSM 10701

63.063

95.143

0.6
  recA Neisseria gonorrhoeae MS11

63.636

94.286

0.6
  recA Neisseria gonorrhoeae strain FA1090

63.636

94.286

0.6
  recA Neisseria gonorrhoeae MS11

63.636

94.286

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

93.714

0.6
  recA Helicobacter pylori strain NCTC11637

62.805

93.714

0.589
  recA Helicobacter pylori 26695

62.805

93.714

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

90.571

0.563

Multiple sequence alignment