Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GEOTH_RS12895 Genome accession   NC_015660
Coordinates   2560404..2561651 (-) Length   415 a.a.
NCBI ID   WP_013877191.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2555404..2566651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS12875 (Geoth_2621) spoVS 2555880..2556140 (-) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  GEOTH_RS12880 (Geoth_2622) - 2556267..2557061 (-) 795 WP_013401237.1 TIGR00282 family metallophosphoesterase -
  GEOTH_RS12885 (Geoth_2623) rny 2557145..2558710 (-) 1566 WP_003251600.1 ribonuclease Y -
  GEOTH_RS12890 (Geoth_2624) recA 2559189..2560241 (-) 1053 WP_003251602.1 recombinase RecA Machinery gene
  GEOTH_RS12895 (Geoth_2625) cinA 2560404..2561651 (-) 1248 WP_013877191.1 competence/damage-inducible protein A Machinery gene
  GEOTH_RS12900 (Geoth_2626) pgsA 2561748..2562326 (-) 579 WP_003251605.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GEOTH_RS12905 (Geoth_2627) - 2562382..2563266 (-) 885 WP_013877192.1 helix-turn-helix domain-containing protein -
  GEOTH_RS12910 (Geoth_2628) - 2563291..2564082 (-) 792 WP_003251609.1 DUF3388 domain-containing protein -
  GEOTH_RS12915 (Geoth_2629) - 2564223..2564471 (-) 249 WP_003251611.1 DUF3243 domain-containing protein -
  GEOTH_RS12920 (Geoth_2630) ymfI 2564534..2565250 (-) 717 WP_003251613.1 elongation factor P 5-aminopentanone reductase -
  GEOTH_RS12925 (Geoth_2631) yfmH 2565290..2566582 (-) 1293 WP_041270232.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44928.79 Da        Isoelectric Point: 7.1401

>NTDB_id=41272 GEOTH_RS12895 WP_013877191.1 2560404..2561651(-) (cinA) [Parageobacillus thermoglucosidasius C56-YS93]
MNAEIIAVGSELLLGQIANTNAQFLSAQLAELGINVYFHTVVGDNADRLEKAVKVAQTRANLIIFTGGLGPTKDDLTKET
IARLLQRELVIDKEALHSIEAYFARTGRTMTENNKKQALVLQGSTVFRNEHGMAPGMAMTVGAITYMLLPGPPKEMQPMF
SKYGRPFLMEKLDRHERIESRVLRFFGIGESQLETEIEDLIEQQSNPTIAPLAGDGEVTLRLTAKHHSEIEAKKLLDQTE
QAILARVGRYFYGYNDDTLFKNTVKLLKEKKKTVAAAESLTGGLFLTELTAIPGASQVVRGGVVCYTNEVKEKVLHVPAS
VLATDGAVSERCAKLLAENVRALCGADIGISFTGVAGPDPLEGKSVGTVYIGISTSENETAVHALALSGPRDAIRTRTAK
YGCSIILKKLAAACL

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=41272 GEOTH_RS12895 WP_013877191.1 2560404..2561651(-) (cinA) [Parageobacillus thermoglucosidasius C56-YS93]
TTGAATGCGGAAATTATCGCTGTCGGCTCCGAATTATTGCTTGGGCAGATCGCTAACACGAATGCGCAGTTTTTATCTGC
CCAGCTCGCTGAACTTGGCATTAACGTCTATTTTCACACTGTTGTTGGCGACAATGCCGACCGTTTGGAAAAAGCGGTAA
AAGTGGCACAAACACGAGCGAATTTAATTATTTTCACAGGCGGACTTGGTCCGACGAAAGACGATTTGACAAAAGAGACG
ATCGCCCGCCTATTGCAACGGGAACTTGTCATTGACAAGGAGGCGCTTCATTCCATTGAAGCGTATTTTGCCCGCACAGG
CCGAACAATGACAGAAAACAATAAAAAACAGGCGCTTGTCTTGCAAGGCTCGACTGTGTTCAGAAACGAACATGGAATGG
CGCCAGGAATGGCAATGACGGTCGGTGCGATTACGTATATGCTTCTCCCAGGTCCCCCAAAGGAAATGCAGCCAATGTTC
AGCAAATACGGGCGTCCGTTCTTAATGGAGAAGCTGGATCGCCATGAGCGCATCGAATCGCGTGTGCTACGCTTTTTCGG
CATCGGTGAATCGCAGCTTGAGACAGAAATCGAAGATCTTATTGAGCAACAATCAAACCCGACGATCGCCCCTCTTGCCG
GCGATGGGGAAGTAACGTTGCGTTTGACTGCAAAACACCATTCGGAAATCGAAGCCAAAAAGCTGCTTGACCAGACCGAA
CAAGCGATTTTAGCGCGCGTCGGCCGTTATTTTTACGGCTACAATGACGACACGTTGTTTAAAAATACGGTGAAGCTGTT
GAAGGAAAAAAAGAAAACGGTCGCGGCTGCCGAAAGCCTCACTGGCGGGCTTTTCTTAACGGAATTAACGGCCATTCCCG
GCGCTTCCCAAGTGGTTCGCGGCGGGGTCGTCTGCTATACCAATGAAGTGAAGGAGAAAGTGCTTCACGTTCCCGCTTCT
GTTTTAGCAACCGACGGAGCGGTAAGTGAACGCTGCGCGAAGCTGTTGGCGGAAAATGTCCGCGCGCTTTGCGGCGCAGA
TATTGGCATTAGCTTTACAGGCGTGGCAGGACCGGATCCGCTTGAAGGAAAGTCGGTCGGTACCGTATATATTGGCATTT
CCACTTCTGAAAATGAAACAGCTGTCCACGCCCTCGCGTTATCCGGCCCGCGTGATGCAATCCGCACCCGCACTGCTAAG
TACGGCTGCTCCATTATATTAAAAAAATTGGCAGCTGCATGTTTGTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.294

98.313

0.593
  cinA Streptococcus mitis SK321

46.429

100

0.47
  cinA Streptococcus mutans UA159

48.371

96.145

0.465
  cinA Streptococcus mitis NCTC 12261

45.952

100

0.465
  cinA Streptococcus pneumoniae Rx1

45.107

100

0.455
  cinA Streptococcus pneumoniae R6

45.107

100

0.455
  cinA Streptococcus pneumoniae D39

44.869

100

0.453
  cinA Streptococcus pneumoniae TIGR4

47.927

93.012

0.446
  cinA Streptococcus suis isolate S10

42.744

91.325

0.39

Multiple sequence alignment