Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SGPB_RS09910 Genome accession   NC_015600
Coordinates   2018012..2019166 (-) Length   384 a.a.
NCBI ID   WP_009855165.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2013012..2024166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS09885 (SGPB_1944) - 2014139..2015727 (-) 1589 Protein_1957 DUF2079 domain-containing protein -
  SGPB_RS11595 - 2015770..2015898 (-) 129 WP_259293846.1 hypothetical protein -
  SGPB_RS09890 (SGPB_1946) - 2015990..2016295 (-) 306 WP_003066884.1 DUF1292 domain-containing protein -
  SGPB_RS09895 (SGPB_1947) ruvX 2016328..2016747 (-) 420 WP_013852327.1 Holliday junction resolvase RuvX -
  SGPB_RS09900 (SGPB_1948) - 2016744..2017013 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  SGPB_RS09905 (SGPB_1949) spx 2017344..2017742 (-) 399 WP_003066893.1 transcriptional regulator Spx -
  SGPB_RS09910 (SGPB_1950) recA 2018012..2019166 (-) 1155 WP_009855165.1 recombinase RecA Machinery gene
  SGPB_RS09915 (SGPB_1951) cinA 2019216..2020475 (-) 1260 WP_013852328.1 competence/damage-inducible protein A Machinery gene
  SGPB_RS09920 (SGPB_1952) - 2020845..2021792 (-) 948 WP_230321698.1 MFS transporter -
  SGPB_RS09925 (SGPB_1953) - 2022385..2022687 (-) 303 WP_230321699.1 hypothetical protein -
  SGPB_RS11555 (SGPB_1955) - 2022988..2023164 (-) 177 WP_230321700.1 hypothetical protein -
  SGPB_RS09935 (SGPB_1956) - 2023311..2024162 (+) 852 WP_013852329.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41233.81 Da        Isoelectric Point: 4.8577

>NTDB_id=41096 SGPB_RS09910 WP_009855165.1 2018012..2019166(-) (recA) [Streptococcus pasteurianus ATCC 43144]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=41096 SGPB_RS09910 WP_009855165.1 2018012..2019166(-) (recA) [Streptococcus pasteurianus ATCC 43144]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCACTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCTCTTGATATTGCTTTGGGTGCAGGTGGTTACCCTAAAGGGCGTATCATTGAAATTTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCAGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCCGAACACGCACTTGACCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGATGAGCTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCCGTTGCT
GCCCTTGTACCTCGTGCCGAAATCGATGGTGACATTGGTGATAATCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAGTTGTCAGCTTCAATTAATAAAACAAAAACAATTGCTATTTTCATCAACCAATTGCGCGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTTCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGCAATATCGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCTGAAGTTGAAATTATGTATGGTGAAGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACCTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATATTTGGCAGAGCACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATGTTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAAGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

87.306

100

0.878
  recA Streptococcus mitis NCTC 12261

86.198

100

0.862
  recA Streptococcus mitis SK321

86.198

100

0.862
  recA Streptococcus pneumoniae D39

85.309

100

0.862
  recA Streptococcus pneumoniae Rx1

85.309

100

0.862
  recA Streptococcus pneumoniae R6

85.309

100

0.862
  recA Streptococcus pneumoniae TIGR4

85.309

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

79.143

91.146

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

66.849

95.052

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae strain FA1090

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Acinetobacter baumannii D1279779

59.49

91.927

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.115

0.534
  recA Acinetobacter baylyi ADP1

60

88.542

0.531
  recA Pseudomonas stutzeri DSM 10701

57.349

90.365

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment