Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQR93_RS06845 Genome accession   NZ_CP047121
Coordinates   1472386..1473528 (+) Length   380 a.a.
NCBI ID   WP_159298728.1    Uniprot ID   A0A6P1E5D4
Organism   Lentilactobacillus hilgardii strain FLUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1467386..1478528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR93_RS06825 (GQR93_06825) yfmH 1468502..1469785 (+) 1284 WP_003553654.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GQR93_RS06830 (GQR93_06830) - 1469870..1470952 (+) 1083 WP_003553656.1 RodZ family helix-turn-helix domain-containing protein -
  GQR93_RS06835 (GQR93_06835) pgsA 1470977..1471558 (+) 582 WP_003553659.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GQR93_RS06840 (GQR93_06840) cinA 1471813..1472289 (+) 477 WP_003553661.1 CinA family protein Machinery gene
  GQR93_RS06845 (GQR93_06845) recA 1472386..1473528 (+) 1143 WP_159298728.1 recombinase RecA Machinery gene
  GQR93_RS06850 (GQR93_06850) rny 1473834..1475417 (+) 1584 WP_202212595.1 ribonuclease Y -
  GQR93_RS06855 (GQR93_06855) - 1475506..1476306 (+) 801 WP_003553669.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41177.61 Da        Isoelectric Point: 6.8985

>NTDB_id=410785 GQR93_RS06845 WP_159298728.1 1472386..1473528(+) (recA) [Lentilactobacillus hilgardii strain FLUB]
MADQRKVALDKALKSIEKEFGKGSIMRMGDKADTQISTIPTGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVYKDIIDKSGSWYSYGEERIGQGRENAKGYLEEHQDMYKEVER
KVRDAYGIPDDADTGNSTKDSSNDDKGTNKKTSDKKTEKPVKTADSNSKSVDNIDLNIGK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=410785 GQR93_RS06845 WP_159298728.1 1472386..1473528(+) (recA) [Lentilactobacillus hilgardii strain FLUB]
ATGGCTGACCAAAGAAAAGTTGCCTTGGATAAGGCGCTAAAAAGTATTGAAAAAGAATTCGGTAAGGGTTCAATTATGCG
TATGGGTGATAAGGCCGATACACAAATTTCAACAATTCCAACTGGTTCCCTGGCTTTGGATGAAGCACTTGGGGTTGGTG
GCTATCCGCGTGGCCGAATCGTTGAGGTTTACGGCCCGGAAAGTTCGGGTAAAACAACCGTTGCTTTACACGCGGTTGCA
GAAGTTCAAAAACGTGGTGGAACGGCCGCTTATATTGATGCCGAAAATGCACTTGATCCAGTTTATGCAACTCATCTTGG
TGTTAATATTGATGATCTGTTATTATCACAACCGGATACTGGCGAACAGGGTCTCCAAATTACCGATGCCTTGGTCACCA
GTGGTGCAATTGATATTGTTGTAATTGATTCAGTTGCTGCGTTGGTTCCACGTGCGGAAATCGAAGGTGAAATGGGTGAT
ACCCACGTTGGCCTTCAAGCTCGTTTGATGTCCCAAGCGTTAAGAAAATTATCGGGTACGATTAGTAAAACAAAGACAAT
CGCAATTTTTATTAATCAGATTCGTGAAAAAGTCGGTGTCATGTTTGGAAATCCCGAAACAACACCTGGCGGTCGTGCAC
TAAAATTTTACGCGACAATTAGGCTCGAAATTCGACGAGCTGAACAAATTAAAAATGGCACTAATATTATTGGTAATCGT
GTTCGGATTAAAGTTGTCAAGAACAAGGTTGCACCGCCATTTAAACGTGCAGAAGTCGATATCATGTATGGTAAAGGTAT
TTCCCAGTCCGGTGAGTTGGTTGATATGGCTGTTTATAAAGATATTATTGATAAGTCCGGCTCTTGGTATTCATATGGTG
AGGAACGAATTGGCCAGGGGCGTGAAAATGCTAAGGGCTATTTGGAAGAACACCAAGATATGTACAAAGAGGTCGAGAGA
AAAGTCCGTGATGCTTATGGCATACCAGACGATGCGGATACTGGCAACTCGACTAAAGATAGTTCAAATGATGATAAGGG
TACAAATAAAAAAACAAGCGACAAAAAGACTGAAAAACCTGTCAAAACTGCCGATTCCAACTCAAAATCAGTCGATAATA
TTGATTTAAATATTGGAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1E5D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.146

86.316

0.726
  recA Bacillus subtilis subsp. subtilis str. 168

73.112

87.105

0.637
  recA Streptococcus pneumoniae D39

62.943

96.579

0.608
  recA Streptococcus pneumoniae Rx1

62.943

96.579

0.608
  recA Streptococcus pneumoniae R6

62.943

96.579

0.608
  recA Streptococcus pneumoniae TIGR4

62.943

96.579

0.608
  recA Lactococcus lactis subsp. cremoris KW2

67.463

88.158

0.595
  recA Streptococcus mutans UA159

63.739

92.895

0.592
  recA Streptococcus mitis NCTC 12261

63.099

93.421

0.589
  recA Streptococcus pyogenes NZ131

67.47

87.368

0.589
  recA Streptococcus mitis SK321

65.205

90

0.587
  recA Neisseria gonorrhoeae MS11

62.006

86.579

0.537
  recA Neisseria gonorrhoeae MS11

62.006

86.579

0.537
  recA Neisseria gonorrhoeae strain FA1090

62.006

86.579

0.537
  recA Ralstonia pseudosolanacearum GMI1000

63.898

82.368

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

85.526

0.526
  recA Vibrio cholerae strain A1552

57.849

90.526

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.849

90.526

0.524
  recA Pseudomonas stutzeri DSM 10701

60.991

85

0.518
  recA Acinetobacter baylyi ADP1

60.802

85.263

0.518
  recA Acinetobacter baumannii D1279779

60.494

85.263

0.516
  recA Glaesserella parasuis strain SC1401

57.143

90.263

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.271

86.579

0.513
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.451

86.316

0.513
  recA Helicobacter pylori 26695

57.975

85.789

0.497
  recA Helicobacter pylori strain NCTC11637

57.975

85.789

0.497

Multiple sequence alignment