Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D5E69_RS10500 Genome accession   NZ_CP047095
Coordinates   2009247..2010284 (+) Length   345 a.a.
NCBI ID   WP_048003984.1    Uniprot ID   A0A0J5V6S5
Organism   Rossellomorea marisflavi strain 151-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004247..2015284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS10475 (D5E69_10475) - 2004952..2005209 (+) 258 WP_048003989.1 DUF3243 domain-containing protein -
  D5E69_RS10480 (D5E69_10480) - 2005383..2006174 (+) 792 WP_048003988.1 DUF3388 domain-containing protein -
  D5E69_RS10485 (D5E69_10485) - 2006194..2007102 (+) 909 WP_063191227.1 RodZ family helix-turn-helix domain-containing protein -
  D5E69_RS10490 (D5E69_10490) pgsA 2007152..2007730 (+) 579 WP_159129623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D5E69_RS10495 (D5E69_10495) cinA 2007794..2009032 (+) 1239 WP_159129624.1 competence/damage-inducible protein A Machinery gene
  D5E69_RS10500 (D5E69_10500) recA 2009247..2010284 (+) 1038 WP_048003984.1 recombinase RecA Machinery gene
  D5E69_RS10505 (D5E69_10505) rny 2010692..2012251 (+) 1560 WP_048003983.1 ribonuclease Y -
  D5E69_RS10510 (D5E69_10510) - 2012361..2013164 (+) 804 WP_048003982.1 TIGR00282 family metallophosphoesterase -
  D5E69_RS10515 (D5E69_10515) spoVS 2013298..2013558 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  D5E69_RS10520 (D5E69_10520) - 2013640..2014569 (+) 930 WP_159129625.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37451.82 Da        Isoelectric Point: 4.9251

>NTDB_id=410273 D5E69_RS10500 WP_048003984.1 2009247..2010284(+) (recA) [Rossellomorea marisflavi strain 151-25]
MSERKAALDMALKQIEKQFGKGSIMKLGEKTDREIVTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIILKSGAWYSYNEERLGQGRENAKVFLKENPDIRNEIMLK
IRDHYGLDTGRAETEDMEEMSLLDD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=410273 D5E69_RS10500 WP_048003984.1 2009247..2010284(+) (recA) [Rossellomorea marisflavi strain 151-25]
GTGAGTGAACGTAAAGCAGCCTTGGATATGGCGTTAAAACAAATAGAGAAACAATTTGGTAAAGGTTCCATCATGAAATT
GGGAGAAAAGACCGACAGGGAAATCGTGACGGTCCCAAGTGGATCCCTTGCCCTTGATGCAGCACTTGGGGTAGGCGGAT
ATCCACGTGGAAGAATCATTGAAGTGTATGGACCGGAATCGTCCGGTAAGACAACCGTTGCCCTCCATGCCATTGCAGAA
GTACAGGCACAGGGCGGTCAGGCAGCTTTCATCGATGCAGAGCACGCATTGGACCCTGTCTACGCACAGAAATTAGGGGT
CAATATCGATGAGCTCCTTCTTTCGCAGCCGGATACAGGGGAACAGGCATTGGAGATCGCCGAGGCCCTCGTCCGAAGCG
GAGCCGTCGATGCCATCGTCATCGACTCCGTGGCAGCACTTGTTCCGAAAGCCGAGATTGAAGGGGAGATGGGGGATTCA
CACGTGGGGCTCCAAGCACGTCTCATGTCCCAGGCCCTCAGGAAGCTTTCTGGTGCCATCAATAAATCGAAGACCATCGC
CATCTTCATCAACCAGATCCGTGAAAAGGTTGGGGTTATGTTCGGAAACCCGGAAACGACACCTGGTGGACGCGCCCTTA
AATTCTACTCTTCCGTGCGCCTTGAAGTCCGTCGTGCCGAGACCCTCAAGCAGGGGAATGAAATGGTGGGGAATAAGACC
AAGATCAAAGTCGTCAAGAACAAGGTCGCTCCTCCATTCCGGGTTGCAGAGGTGGATATCATGTACGGTGAAGGGATCTC
AAAAGAAGGTGAAATCGTCGACCTTGGTTCTGAACTCGACATCATCCTTAAGAGTGGTGCCTGGTATTCCTATAACGAAG
AACGTCTTGGTCAAGGACGTGAAAACGCAAAAGTATTCCTCAAAGAGAATCCGGACATCCGTAATGAAATCATGCTGAAG
ATCCGTGATCACTACGGTTTGGATACTGGTCGCGCCGAGACAGAGGATATGGAAGAAATGAGTCTGTTAGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J5V6S5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.666

95.362

0.855
  recA Latilactobacillus sakei subsp. sakei 23K

74.063

100

0.745
  recA Streptococcus pneumoniae D39

68.639

97.971

0.672
  recA Streptococcus pneumoniae Rx1

68.639

97.971

0.672
  recA Streptococcus pneumoniae R6

68.639

97.971

0.672
  recA Streptococcus pneumoniae TIGR4

68.639

97.971

0.672
  recA Streptococcus mitis SK321

68.343

97.971

0.67
  recA Streptococcus mitis NCTC 12261

69.369

96.522

0.67
  recA Streptococcus mutans UA159

69.909

95.362

0.667
  recA Streptococcus pyogenes NZ131

69.512

95.072

0.661
  recA Lactococcus lactis subsp. cremoris KW2

68.182

95.652

0.652
  recA Ralstonia pseudosolanacearum GMI1000

66.667

94.783

0.632
  recA Acinetobacter baumannii D1279779

61.96

100

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.69

97.391

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.772

91.594

0.612
  recA Neisseria gonorrhoeae MS11

66.772

91.594

0.612
  recA Neisseria gonorrhoeae MS11

66.772

91.594

0.612
  recA Acinetobacter baylyi ADP1

61.047

99.71

0.609
  recA Vibrio cholerae strain A1552

65

92.754

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65

92.754

0.603
  recA Glaesserella parasuis strain SC1401

64.486

93.043

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

94.783

0.597
  recA Helicobacter pylori 26695

63.077

94.203

0.594
  recA Helicobacter pylori strain NCTC11637

63.077

94.203

0.594
  recA Pseudomonas stutzeri DSM 10701

63.95

92.464

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

94.203

0.58

Multiple sequence alignment