Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D5E69_RS10495 Genome accession   NZ_CP047095
Coordinates   2007794..2009032 (+) Length   412 a.a.
NCBI ID   WP_159129624.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain 151-25     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2002794..2014032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS10470 (D5E69_10470) - 2003995..2004705 (+) 711 WP_048013099.1 SDR family oxidoreductase -
  D5E69_RS10475 (D5E69_10475) - 2004952..2005209 (+) 258 WP_048003989.1 DUF3243 domain-containing protein -
  D5E69_RS10480 (D5E69_10480) - 2005383..2006174 (+) 792 WP_048003988.1 DUF3388 domain-containing protein -
  D5E69_RS10485 (D5E69_10485) - 2006194..2007102 (+) 909 WP_063191227.1 RodZ family helix-turn-helix domain-containing protein -
  D5E69_RS10490 (D5E69_10490) pgsA 2007152..2007730 (+) 579 WP_159129623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D5E69_RS10495 (D5E69_10495) cinA 2007794..2009032 (+) 1239 WP_159129624.1 competence/damage-inducible protein A Machinery gene
  D5E69_RS10500 (D5E69_10500) recA 2009247..2010284 (+) 1038 WP_048003984.1 recombinase RecA Machinery gene
  D5E69_RS10505 (D5E69_10505) rny 2010692..2012251 (+) 1560 WP_048003983.1 ribonuclease Y -
  D5E69_RS10510 (D5E69_10510) - 2012361..2013164 (+) 804 WP_048003982.1 TIGR00282 family metallophosphoesterase -
  D5E69_RS10515 (D5E69_10515) spoVS 2013298..2013558 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44700.80 Da        Isoelectric Point: 4.6678

>NTDB_id=410272 D5E69_RS10495 WP_159129624.1 2007794..2009032(+) (cinA) [Rossellomorea marisflavi strain 151-25]
MNAEIIAVGSELLLGQIANTNAQFISERLAEVGVNVFYHTSVGDNPARLEEVIKHAEERADLLIFTGGLGPTKDDLTKET
IARSLGVSLSMDEDAMDSIKAYFEKVGRVMTPNNEKQALILEGSVPLKNDFGMAPGMVFQQAGKAYILLPGPPSEMRPMF
STYGIPAVMNLMKRKEVIHSRVLRFFGIGESQLEADLEELIDRQTNPTIAPLAGDGEVTLRLTAKHESKDVAETLLNELE
SEIRGTVGEYLYGYDQDSLERVGFRLLKEKGLTLAAAESLTAGLFQSSLASIAGASSVLEGGVVCYQDSVKRNVLNVREE
TLKNQGAVSRECAIELAANVRSLFKTDIGISFTGVAGPEAQGDLPPGTVWIGIAAGEEEPKAYQLTLAGSRNGNRSRTVK
YGWHYLVKECNE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=410272 D5E69_RS10495 WP_159129624.1 2007794..2009032(+) (cinA) [Rossellomorea marisflavi strain 151-25]
ATGAATGCAGAAATTATCGCAGTCGGATCGGAATTACTTTTGGGGCAGATCGCTAATACCAATGCCCAGTTCATCTCAGA
AAGGCTTGCCGAAGTAGGGGTGAATGTGTTTTATCATACAAGTGTGGGAGACAACCCGGCAAGACTTGAAGAAGTCATCA
AGCATGCTGAAGAGAGGGCGGATCTGCTCATCTTTACAGGAGGTCTCGGACCGACCAAGGATGATCTCACCAAAGAGACC
ATTGCAAGGAGTCTGGGCGTCAGCCTCTCGATGGATGAAGATGCCATGGACTCCATCAAGGCTTATTTTGAGAAAGTAGG
CAGGGTGATGACACCCAACAACGAAAAGCAGGCTTTGATACTCGAGGGTTCGGTACCATTGAAAAATGATTTTGGCATGG
CACCCGGGATGGTGTTTCAACAAGCGGGTAAAGCATATATCCTGTTGCCTGGCCCGCCTTCTGAAATGAGGCCGATGTTC
AGTACCTACGGGATTCCTGCCGTCATGAACCTCATGAAACGAAAAGAGGTGATCCACTCCCGTGTTCTCCGTTTCTTCGG
AATCGGCGAGTCGCAGCTAGAAGCCGACCTTGAAGAACTCATCGACCGCCAGACGAATCCGACGATCGCACCTCTTGCAG
GTGACGGTGAAGTGACCTTGCGATTGACGGCCAAGCACGAATCAAAAGATGTCGCGGAGACACTTCTGAATGAGCTGGAA
TCAGAAATCCGCGGAACCGTCGGGGAGTATCTATATGGATACGATCAAGATTCACTCGAACGGGTGGGCTTCAGACTCCT
GAAAGAAAAAGGCTTGACCCTTGCGGCAGCTGAGAGCCTGACGGCAGGCTTGTTCCAATCCAGCCTCGCCTCGATTGCAG
GAGCTTCTTCCGTCCTTGAGGGCGGAGTGGTGTGCTATCAGGATTCTGTGAAAAGGAATGTGCTGAACGTACGGGAGGAA
ACATTGAAGAACCAAGGTGCGGTCAGTCGTGAATGTGCCATTGAGCTTGCAGCAAATGTGCGGTCACTGTTCAAAACCGA
TATCGGCATCAGCTTTACCGGCGTAGCAGGACCTGAAGCGCAGGGGGATCTGCCTCCTGGTACCGTCTGGATCGGCATAG
CCGCTGGTGAGGAAGAGCCGAAGGCATACCAGCTCACTCTGGCCGGAAGCCGGAACGGCAACCGCAGCCGGACGGTGAAG
TATGGGTGGCATTATTTGGTGAAGGAATGCAATGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.425

98.786

0.607
  cinA Streptococcus mitis SK321

46.411

100

0.471
  cinA Streptococcus mutans UA159

46.135

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.461
  cinA Streptococcus pneumoniae TIGR4

44.976

100

0.456
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.456
  cinA Streptococcus pneumoniae R6

44.976

100

0.456
  cinA Streptococcus pneumoniae D39

44.737

100

0.454
  cinA Streptococcus suis isolate S10

40.732

99.515

0.405

Multiple sequence alignment