Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ERJ70_RS09345 Genome accession   NZ_CP046956
Coordinates   1857856..1858302 (+) Length   148 a.a.
NCBI ID   WP_374099795.1    Uniprot ID   -
Organism   Sediminibacillus dalangtanensis strain DP4-553-S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852856..1863302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ70_RS09320 (ERJ70_09260) - 1852926..1853717 (+) 792 WP_074597312.1 YmfK family protein -
  ERJ70_RS09325 (ERJ70_09265) - 1853739..1854668 (+) 930 WP_209368820.1 RodZ domain-containing protein -
  ERJ70_RS09330 (ERJ70_09270) pgsA 1854789..1855367 (+) 579 WP_209369254.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ERJ70_RS09335 (ERJ70_09275) cinA 1855364..1856623 (+) 1260 WP_209368821.1 competence/damage-inducible protein A Machinery gene
  ERJ70_RS09340 (ERJ70_09280) recA 1856895..1857500 (+) 606 Protein_1816 recombinase RecA -
  ERJ70_RS09345 (ERJ70_09285) recA 1857856..1858302 (+) 447 WP_374099795.1 hypothetical protein Machinery gene
  ERJ70_RS09350 (ERJ70_09290) rny 1858569..1860134 (+) 1566 WP_026570296.1 ribonuclease Y -
  ERJ70_RS09355 (ERJ70_09295) - 1860294..1861091 (+) 798 WP_209368822.1 TIGR00282 family metallophosphoesterase -
  ERJ70_RS09360 (ERJ70_09300) - 1861199..1861459 (+) 261 WP_026570294.1 stage V sporulation protein S -
  ERJ70_RS09365 (ERJ70_09305) - 1861559..1862482 (+) 924 WP_209368823.1 dipeptidase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16942.01 Da        Isoelectric Point: 4.6962

>NTDB_id=409682 ERJ70_RS09345 WP_374099795.1 1857856..1858302(+) (recA) [Sediminibacillus dalangtanensis strain DP4-553-S]
MITKLNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKTKIKVVKNKVAPPFKQAEVDIMYGEGISREGELLDIGS
DLDIVQKSGAWYSYNEERLGQGRENAKQFLKENEDIRMEIYNTIRSHYEMDTAPETSEETENQETMDM

Nucleotide


Download         Length: 447 bp        

>NTDB_id=409682 ERJ70_RS09345 WP_374099795.1 1857856..1858302(+) (recA) [Sediminibacillus dalangtanensis strain DP4-553-S]
GTGATAACAAAACTGAATCCGGAAACGACTCCTGGCGGGCGTGCTTTGAAATTCTATTCATCTGTAAGACTCGAAGTGCG
CAGAGCTGAAACGCTGAAACAAGGAAATGACATGGTTGGTAACAAAACAAAAATCAAAGTAGTAAAAAACAAGGTAGCTC
CTCCGTTTAAACAAGCAGAAGTAGACATCATGTACGGAGAGGGTATATCCCGGGAAGGCGAACTATTGGACATTGGTTCC
GATCTCGACATTGTACAAAAAAGCGGTGCCTGGTACTCCTATAACGAGGAACGTCTCGGACAAGGGCGGGAAAATGCCAA
GCAGTTCCTGAAAGAGAATGAAGATATCCGTATGGAAATCTACAATACTATTCGCAGCCATTATGAAATGGATACTGCCC
CGGAAACTTCCGAAGAAACGGAAAACCAGGAAACAATGGACATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.746

85.135

0.696
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

96.622

0.595
  recA Streptococcus pneumoniae D39

60.839

96.622

0.588
  recA Streptococcus pneumoniae TIGR4

60.839

96.622

0.588
  recA Streptococcus pneumoniae R6

60.839

96.622

0.588
  recA Streptococcus pneumoniae Rx1

60.839

96.622

0.588
  recA Streptococcus mutans UA159

58.741

96.622

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.145

93.243

0.561
  recA Streptococcus mitis NCTC 12261

57.746

95.946

0.554
  recA Helicobacter pylori 26695

57.447

95.27

0.547
  recA Helicobacter pylori strain NCTC11637

57.447

95.27

0.547
  recA Streptococcus mitis SK321

57.042

95.946

0.547
  recA Neisseria gonorrhoeae MS11

57.143

94.595

0.541
  recA Neisseria gonorrhoeae MS11

57.143

94.595

0.541
  recA Neisseria gonorrhoeae strain FA1090

57.143

94.595

0.541
  recA Streptococcus pyogenes NZ131

62.205

85.811

0.534
  recA Ralstonia pseudosolanacearum GMI1000

60.163

83.108

0.5
  recA Vibrio cholerae strain A1552

56.154

87.838

0.493
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.154

87.838

0.493
  recA Glaesserella parasuis strain SC1401

50

98.649

0.493
  recA Lactococcus lactis subsp. cremoris KW2

56.589

87.162

0.493
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56

84.459

0.473
  recA Acinetobacter baumannii D1279779

48.252

96.622

0.466
  recA Pseudomonas stutzeri DSM 10701

53.125

86.486

0.459
  recA Acinetobacter baylyi ADP1

46.853

96.622

0.453
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.167

81.081

0.399

Multiple sequence alignment