Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ERJ70_RS09335 Genome accession   NZ_CP046956
Coordinates   1855364..1856623 (+) Length   419 a.a.
NCBI ID   WP_209368821.1    Uniprot ID   -
Organism   Sediminibacillus dalangtanensis strain DP4-553-S     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1850364..1861623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ70_RS09310 (ERJ70_09250) ymfI 1851397..1852113 (+) 717 WP_209368818.1 elongation factor P 5-aminopentanone reductase -
  ERJ70_RS09315 (ERJ70_09255) - 1852202..1852462 (+) 261 WP_209368819.1 DUF3243 domain-containing protein -
  ERJ70_RS09320 (ERJ70_09260) - 1852926..1853717 (+) 792 WP_074597312.1 YmfK family protein -
  ERJ70_RS09325 (ERJ70_09265) - 1853739..1854668 (+) 930 WP_209368820.1 RodZ domain-containing protein -
  ERJ70_RS09330 (ERJ70_09270) pgsA 1854789..1855367 (+) 579 WP_209369254.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ERJ70_RS09335 (ERJ70_09275) cinA 1855364..1856623 (+) 1260 WP_209368821.1 competence/damage-inducible protein A Machinery gene
  ERJ70_RS09340 (ERJ70_09280) recA 1856895..1857500 (+) 606 Protein_1816 recombinase RecA -
  ERJ70_RS09345 (ERJ70_09285) recA 1857856..1858302 (+) 447 WP_374099795.1 hypothetical protein Machinery gene
  ERJ70_RS09350 (ERJ70_09290) rny 1858569..1860134 (+) 1566 WP_026570296.1 ribonuclease Y -
  ERJ70_RS09355 (ERJ70_09295) - 1860294..1861091 (+) 798 WP_209368822.1 TIGR00282 family metallophosphoesterase -
  ERJ70_RS09360 (ERJ70_09300) - 1861199..1861459 (+) 261 WP_026570294.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46161.67 Da        Isoelectric Point: 5.3513

>NTDB_id=409681 ERJ70_RS09335 WP_209368821.1 1855364..1856623(+) (cinA) [Sediminibacillus dalangtanensis strain DP4-553-S]
MTKKQVSAEIVAVGTELLLGQISNTNGQWLSKRLADYGVNVYHHSVVGDNLERVKQVFTTAAKRSDIVLVTGGLGPTEDD
MTRDAFQEIYGVDVVTDEPSLQKIISYFKNNHRKMTPNNRKQALIFNGSQALPNHVGMAPGMAMETEDVTWIFMPGVPRE
MKQIAEEYAFPYIKEKYQLDRVIQSRMLRFVGIGESQLEHQLQSLIAVQTNPTIAPLALEGEVAVRLTASASTSQAAERL
IREAEKQILELVGDFFYGYDEENLEAKTVEMLAEGKLKIAAAESLTGGMFTSKLVSVPGASQIVAGSVVCYSPEVKQSVV
KVLPETIDRFGTVSKQCAEEMAENILSSFHADIGISFTGVAGPGESEGNPPGTVFIGISQQQKETKVYQFQFNGNRETIR
ARTVKKGLELLYRLNNNMI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=409681 ERJ70_RS09335 WP_209368821.1 1855364..1856623(+) (cinA) [Sediminibacillus dalangtanensis strain DP4-553-S]
ATGACAAAGAAACAGGTAAGCGCAGAAATTGTTGCGGTTGGGACAGAGCTATTACTTGGCCAAATATCCAATACGAACGG
TCAGTGGTTATCCAAACGGCTTGCAGATTATGGTGTTAATGTTTACCACCACAGTGTGGTCGGTGATAATCTAGAGAGAG
TCAAACAAGTTTTTACCACTGCTGCAAAACGATCCGATATCGTATTGGTTACCGGAGGTCTTGGTCCGACCGAGGATGAT
ATGACACGAGATGCCTTTCAGGAAATCTATGGGGTGGATGTAGTAACGGATGAACCATCTCTTCAAAAAATTATTTCCTA
TTTTAAAAATAACCACAGGAAAATGACTCCTAATAATCGTAAACAGGCATTGATATTCAACGGCTCACAAGCGCTGCCGA
ATCACGTCGGGATGGCTCCCGGAATGGCAATGGAGACAGAGGATGTCACCTGGATTTTTATGCCTGGAGTTCCAAGAGAA
ATGAAACAAATTGCAGAAGAATATGCATTCCCTTATATCAAAGAAAAATATCAGCTTGATAGAGTAATACAATCACGGAT
GTTAAGATTTGTCGGTATTGGCGAATCACAGCTTGAGCATCAGTTGCAATCGTTAATTGCCGTTCAAACAAATCCTACGA
TTGCTCCGTTGGCATTAGAGGGAGAAGTAGCAGTTCGGTTGACAGCTAGCGCCTCAACTAGTCAAGCAGCAGAACGATTG
ATCAGGGAAGCCGAAAAACAGATTCTGGAACTGGTTGGCGACTTCTTTTACGGATATGATGAGGAGAACTTGGAAGCCAA
AACGGTGGAAATGCTGGCGGAAGGTAAATTGAAAATAGCTGCAGCAGAGAGTTTGACAGGAGGAATGTTCACTAGCAAAC
TTGTTTCTGTTCCAGGTGCTTCCCAAATCGTGGCGGGGAGCGTTGTTTGTTATTCTCCAGAAGTGAAACAATCGGTTGTT
AAAGTCCTTCCTGAAACAATTGACAGGTTTGGGACGGTCAGTAAGCAGTGTGCAGAAGAAATGGCGGAAAACATTCTTTC
GTCGTTTCATGCGGATATAGGAATTAGCTTCACAGGAGTTGCTGGCCCTGGGGAATCGGAAGGAAATCCTCCCGGAACTG
TGTTTATCGGCATTTCCCAACAACAAAAAGAGACGAAGGTTTATCAGTTCCAGTTTAACGGAAATCGTGAGACGATTCGT
GCCCGCACTGTGAAAAAAGGGCTGGAGTTATTGTATCGTCTTAATAACAATATGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(10-174)

Damage-inducible protein CinA KH domain (CinA_KH)

(185-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.351

97.136

0.499
  cinA Streptococcus pneumoniae TIGR4

41.05

100

0.411
  cinA Streptococcus mitis SK321

41.148

99.761

0.41
  cinA Streptococcus pneumoniae Rx1

40.811

100

0.408
  cinA Streptococcus pneumoniae R6

40.811

100

0.408
  cinA Streptococcus pneumoniae D39

40.573

100

0.406
  cinA Streptococcus mitis NCTC 12261

40.191

99.761

0.401
  cinA Streptococcus mutans UA159

41.353

95.227

0.394

Multiple sequence alignment