Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPZ88_RS03960 Genome accession   NZ_CP046919
Coordinates   776231..777385 (-) Length   384 a.a.
NCBI ID   WP_039696214.1    Uniprot ID   A0A1H0ZUF9
Organism   Streptococcus ruminicola strain CNU_G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 771231..782385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03935 (GPZ88_03895) - 772491..774065 (-) 1575 WP_166043511.1 DUF2079 domain-containing protein -
  GPZ88_RS10400 - 774108..774236 (-) 129 WP_267887989.1 hypothetical protein -
  GPZ88_RS03940 (GPZ88_03900) - 774352..774669 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GPZ88_RS03945 (GPZ88_03905) ruvX 774702..775121 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  GPZ88_RS03950 (GPZ88_03910) - 775118..775387 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  GPZ88_RS03955 (GPZ88_03915) spx 775635..776033 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  GPZ88_RS03960 (GPZ88_03920) recA 776231..777385 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  GPZ88_RS03965 (GPZ88_03925) cinA 777432..778691 (-) 1260 WP_166043513.1 competence/damage-inducible protein A Machinery gene
  GPZ88_RS03970 (GPZ88_03930) - 778820..779998 (-) 1179 WP_166043515.1 MFS transporter -
  GPZ88_RS03975 (GPZ88_03935) - 780203..780754 (-) 552 WP_166043517.1 DNA-3-methyladenine glycosylase I -
  GPZ88_RS03980 (GPZ88_03940) ruvA 780784..781377 (-) 594 WP_074869549.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41293.95 Da        Isoelectric Point: 4.9865

>NTDB_id=409418 GPZ88_RS03960 WP_039696214.1 776231..777385(-) (recA) [Streptococcus ruminicola strain CNU_G2]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAATTENVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=409418 GPZ88_RS03960 WP_039696214.1 776231..777385(-) (recA) [Streptococcus ruminicola strain CNU_G2]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATTGAAAAAGATTTTGGTAAGGGAGCTGTTATGCGCCTTGGCGAACGCGCTGAACAAAAAGTTCAAGTGATGA
GTTCAGGTAGTTTGGCTCTTGATATCGCTCTTGGTGCAGGTGGTTACCCTAAAGGACGTATCATTGAAATCTATGGTCCT
GAAAGTTCAGGTAAAACAACTGTTGCCCTTCATGCTGTAGCACAAGCTCAAAAAGAAGGCGGTATCGCAGCCTTTATCGA
TGCTGAACATGCCCTTGACCCAGCTTATGCAGCAGCCCTTGGTGTTAATATTGATGAACTTCTTTTGTCACAACCTGATT
CAGGAGAACAAGGTCTTGAAATCGCTGGAAAATTGATCGATTCAGGTGCGGTTGATCTTGTTGTTGTCGACTCTGTTGCA
GCTCTTGTTCCACGTGCCGAAATCGATGGTGATATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTATCAGCTTCTATCAATAAAACAAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGTG
TTATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCCCTTAAATTCTACTCTTCAGTTCGTCTAGATGTGCGAGGA
AACACACAAATCAAAGGTACTGGTGATCAAAAAGATAGCAACATTGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAACTGCTGAAGTGGAAATCATGTATGGTGAAGGAATTTCACGCACTGGTGAATTGATTAAAA
TCGCTAGTGATTTGGATATCATTAAAAAAGCTGGTGCTTGGTTCTCTTACAACGGTGAGAAGATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCATCCAGAAATCTTTGACGAAATCGACCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAAACTTTCTGAAGAATCAGCAGCAACTACTGAAAATGTAGATGAAGTTGTTC
TTGATTTGGATGATGCGATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0ZUF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

88.63

100

0.893
  recA Streptococcus mitis NCTC 12261

86.458

100

0.865
  recA Streptococcus mitis SK321

85.938

100

0.859
  recA Streptococcus pneumoniae D39

85.455

100

0.857
  recA Streptococcus pneumoniae Rx1

85.455

100

0.857
  recA Streptococcus pneumoniae R6

85.455

100

0.857
  recA Streptococcus pneumoniae TIGR4

85.455

100

0.857
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.555

91.927

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

85.677

0.594
  recA Neisseria gonorrhoeae strain FA1090

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.357

88.281

0.542
  recA Glaesserella parasuis strain SC1401

60.294

88.542

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

84.115

0.526
  recA Acinetobacter baylyi ADP1

59.412

88.542

0.526
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Pseudomonas stutzeri DSM 10701

57.061

90.365

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

57.784

86.979

0.503
  recA Helicobacter pylori strain NCTC11637

57.784

86.979

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment