Detailed information NTG0407835

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GPY30_RS13885
• Genome accession: NZ_CP046791
• Coordinates: 2824470..2825516 (-)
• Length: 348 a.a.
• NCBI ID: WP_039430472.1
• Uniprot ID: A0A0F2HTG3
• Organism: Vibrio navarrensis strain 2462-79
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2819470..2830516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY30_RS13865	csrA	2819517..2819714 (-)	198	WP_039430468.1	carbon storage regulator CsrA	-
GPY30_RS13870	-	2819806..2820993 (-)	1188	WP_039436035.1	aspartate kinase	-
GPY30_RS13875	alaS	2821190..2823772 (-)	2583	WP_158134426.1	alanine--tRNA ligase	-
GPY30_RS13880	recX	2823954..2824412 (-)	459	WP_158134428.1	recombination regulator RecX	-
GPY30_RS13885	recA	2824470..2825516 (-)	1047	WP_039430472.1	recombinase RecA	Machinery gene
GPY30_RS13890	pncC	2825694..2826185 (-)	492	WP_158134430.1	nicotinamide-nucleotide amidase	-
GPY30_RS13895	mutS	2826267..2828828 (+)	2562	WP_158134431.1	DNA mismatch repair protein MutS	-
GPY30_RS13900	rpoS	2828926..2829924 (-)	999	WP_158134433.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 37532.08 Da
• Isoelectric Point: 4.9706

>NTDB_id=407835 GPY30_RS13885 WP_039430472.1 2824470..2825516(-) (recA) [Vibrio navarrensis strain 2462-79]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKEHVDVAKVLDT
KLREMLLSATPLEGAELADEAPEQEEEF

Nucleotide

• Length: 1047 bp

>NTDB_id=407835 GPY30_RS13885 WP_039430472.1 2824470..2825516(-) (recA) [Vibrio navarrensis strain 2462-79]
ATGGACGAGAATAAACAAAAAGCGCTCGCCGCTGCGCTAGGTCAGATCGAAAAGCAGTTTGGTAAAGGCTCTATCATGCG
CTTAGGCGACAACCGTGCAATGGATGTCGAAACGATTTCTACGGGCTCTCTTTCTCTGGACATCGCACTAGGCGCTGGCG
GCCTGCCAATGGGTCGTATTGTCGAAATCTTTGGTCCAGAATCATCCGGTAAAACCACATTAACACTTGAGCTGATTGCC
GCTGCTCAACGTGAAGGTAAAACCTGTGCTTTTATCGATGCGGAACACGCGCTCGACCCTGTTTATGCGAAAAAACTGGG
TGTTAACATTGACCAACTGCTGGTCTCTCAGCCTGACACGGGCGAGCAAGCTCTGGAAATCTGTGACGCTTTGGCACGCT
CTGGTGCGGTCGACGTGATTGTTGTTGACTCCGTTGCTGCCTTGACACCAAAAGCCGAGATCGAAGGTGAGATGGGCGAT
TCGCACATGGGGCTACAGGCTCGTATGCTCTCTCAAGCGATGCGTAAACTCACTGGCAACCTTAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAGACCACAACGGGTGGTAACGCGC
TGAAATTCTACGCTTCTGTTCGTTTGGATATCCGTCGTACGGGGTCTATCAAAGAAGGCGACGAAGTGGTGGGTAACGAA
ACGCGTATCAAAGTAGTGAAAAACAAGATCGCGGCGCCATTTAAAGAAGCCAATACTCAGATTATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGATCTCGGCGTGAAATGTAAGCTGATCGAGAAATCAGGTGCTTGGTACAGCTACAACG
GTGATAAGATCGGCCAAGGTAAAGCAAATGCCTGTAAGTATCTGAAAGAACACGTTGATGTGGCGAAAGTATTGGATACC
AAACTGCGTGAAATGCTGCTCTCTGCCACCCCGCTAGAAGGCGCGGAACTGGCTGATGAAGCGCCAGAGCAAGAAGAAGA
GTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A0F2HTG3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	96.037	94.253	0.905
recA	Vibrio cholerae O1 biovar El Tor strain E7946	96.037	94.253	0.905
recA	Pseudomonas stutzeri DSM 10701	72.464	99.138	0.718
recA	Acinetobacter baumannii D1279779	70.882	97.701	0.693
recA	Acinetobacter baylyi ADP1	72.256	94.253	0.681
recA	Glaesserella parasuis strain SC1401	72.086	93.678	0.675
recA	Ralstonia pseudosolanacearum GMI1000	69.207	94.253	0.652
recA	Neisseria gonorrhoeae MS11	68.712	93.678	0.644
recA	Neisseria gonorrhoeae MS11	68.712	93.678	0.644
recA	Neisseria gonorrhoeae strain FA1090	68.712	93.678	0.644
recA	Helicobacter pylori 26695	59.71	99.138	0.592
recA	Helicobacter pylori strain NCTC11637	59.42	99.138	0.589
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.924	90.805	0.58
recA	Bacillus subtilis subsp. subtilis str. 168	62.928	92.241	0.58
recA	Streptococcus pneumoniae R6	62.229	92.816	0.578
recA	Streptococcus pneumoniae TIGR4	62.229	92.816	0.578
recA	Streptococcus pneumoniae Rx1	62.229	92.816	0.578
recA	Streptococcus pneumoniae D39	62.229	92.816	0.578
recA	Lactococcus lactis subsp. cremoris KW2	61.92	92.816	0.575
recA	Latilactobacillus sakei subsp. sakei 23K	61.994	92.241	0.572
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.121	95.115	0.572
recA	Streptococcus mitis SK321	61.61	92.816	0.572
recA	Streptococcus pyogenes NZ131	60.923	93.391	0.569
recA	Streptococcus mitis NCTC 12261	61.3	92.816	0.569
recA	Streptococcus mutans UA159	60.308	93.391	0.563
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.451	94.253	0.56