Detailed information NTG0407837

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY30_RS13900
• Genome accession: NZ_CP046791
• Coordinates: 2828926..2829924 (-)
• Length: 332 a.a.
• NCBI ID: WP_158134433.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 2462-79
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2823926..2834924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY30_RS13880	recX	2823954..2824412 (-)	459	WP_158134428.1	recombination regulator RecX	-
GPY30_RS13885	recA	2824470..2825516 (-)	1047	WP_039430472.1	recombinase RecA	Machinery gene
GPY30_RS13890	pncC	2825694..2826185 (-)	492	WP_158134430.1	nicotinamide-nucleotide amidase	-
GPY30_RS13895	mutS	2826267..2828828 (+)	2562	WP_158134431.1	DNA mismatch repair protein MutS	-
GPY30_RS13900	rpoS	2828926..2829924 (-)	999	WP_158134433.1	RNA polymerase sigma factor RpoS	Regulator
GPY30_RS13905	-	2830010..2830933 (-)	924	WP_158135133.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY30_RS13910	-	2830949..2831575 (-)	627	WP_039439486.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY30_RS13915	surE	2831568..2832344 (-)	777	WP_158135135.1	5'/3'-nucleotidase SurE	-
GPY30_RS13920	truD	2832347..2833393 (-)	1047	WP_158134435.1	tRNA pseudouridine(13) synthase TruD	-
GPY30_RS13925	ispF	2833428..2833904 (-)	477	WP_158134437.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY30_RS13930	ispD	2833908..2834612 (-)	705	WP_158134439.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY30_RS13935	ftsB	2834614..2834895 (-)	282	WP_039430478.1	cell division protein FtsB	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37996.81 Da
• Isoelectric Point: 4.4064

>NTDB_id=407837 GPY30_RS13900 WP_158134433.1 2828926..2829924(-) (rpoS) [Vibrio navarrensis strain 2462-79]
MSNSNAVTKVDDFDIDQMDVELNDSDIEVSDKEDNSSDTNAALREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYAR
RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDA
NNSDPEVSTQDEDMRNSLIFWLEELNPKQKEVLARRFGLLGYEPSTLEEVGKEIGLTRERVRQIQVEGLRRLREILVKQG
LNMENLFDVDMD

Nucleotide

• Length: 999 bp

>NTDB_id=407837 GPY30_RS13900 WP_158134433.1 2828926..2829924(-) (rpoS) [Vibrio navarrensis strain 2462-79]
ATGAGTAACAGCAATGCAGTAACCAAAGTTGATGATTTCGATATTGATCAAATGGATGTAGAGTTGAACGACTCTGATAT
CGAAGTTAGCGATAAAGAAGACAACAGTTCCGATACCAATGCCGCACTCAGAGAAGAGTTTGATGCCAGCAACAAAAGCT
TGGATGCGACTCAGCTTTACCTCGGAGAGATCGGTTTCTCACCTCTACTGACCGCAGAAGAAGAAGTACTTTACGCTCGA
CGCGCATTGCGTGGGGATGAAGCAGCACGTAAACGTATGATTGAAAGCAACTTACGTTTGGTTGTGAAGATTTCTCGCCG
CTACAGCAACCGTGGATTAGCGTTACTTGATCTGATTGAAGAGGGTAACCTCGGCCTGATCAGAGCGGTGGAAAAATTTG
ACCCAGAGCGCGGCTTCCGCTTCTCTACTTACGCCACTTGGTGGATTCGTCAAACCATCGAACGCGCACTGATGAATCAG
ACTCGGACCATCCGTTTACCTATCCATGTTGTCAAAGAGTTGAACATCTATCTGCGTACCGCGCGCGAGTTGTCGCAAAA
ACTCGACCACGAACCTACGGCAGAAGAGATCGCTTCTCAGCTGGATATCCCGGTTGAAGATGTCAGCAAAATGCTGCGCC
TCAACGAGCGGATTAGCTCTGTCGATACACCGATTGGTGGTGACGGGGAAAAAGCGCTGCTGGATATTATTCCCGATGCG
AACAACTCCGATCCTGAAGTGTCAACTCAGGATGAAGATATGCGCAACTCACTGATTTTCTGGTTAGAAGAGCTAAATCC
GAAACAGAAAGAAGTGCTGGCGCGTCGCTTTGGATTGCTTGGTTATGAGCCATCGACTCTCGAAGAAGTGGGCAAGGAGA
TTGGCTTGACGCGTGAGCGCGTGCGTCAGATCCAAGTTGAAGGGCTACGCAGATTACGTGAGATCTTAGTCAAACAGGGA
CTTAACATGGAAAACCTGTTTGATGTCGATATGGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-88)

• Sigma-70 region 3 (Sigma70_r3) (173-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.635	100	0.831