Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPY39_RS11320 Genome accession   NZ_CP046783
Coordinates   2237703..2238746 (-) Length   347 a.a.
NCBI ID   WP_021450024.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2232703..2243746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS11300 csrA 2232707..2232904 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  GPY39_RS11305 - 2232997..2234184 (-) 1188 WP_005478552.1 aspartate kinase -
  GPY39_RS11310 alaS 2234387..2236969 (-) 2583 WP_005455546.1 alanine--tRNA ligase -
  GPY39_RS11315 recX 2237112..2237579 (-) 468 WP_021450023.1 recombination regulator RecX -
  GPY39_RS11320 recA 2237703..2238746 (-) 1044 WP_021450024.1 recombinase RecA Machinery gene
  GPY39_RS11325 pncC 2238946..2239428 (-) 483 WP_021450025.1 nicotinamide-nucleotide amidase -
  GPY39_RS11330 mutS 2239513..2242074 (+) 2562 WP_005478546.1 DNA mismatch repair protein MutS -
  GPY39_RS11335 rpoS 2242154..2243143 (-) 990 WP_005478537.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37462.94 Da        Isoelectric Point: 5.1850

>NTDB_id=407689 GPY39_RS11320 WP_021450024.1 2237703..2238746(-) (recA) [Vibrio parahaemolyticus strain 2013V-1181]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAASEKPEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=407689 GPY39_RS11320 WP_021450024.1 2237703..2238746(-) (recA) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTTGAGATTTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACACTAGAGTTGATTGCT
GCTGCACAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTACGCTAAAAAGCTTGG
TGTTGATATCGATGCGCTATTGGTATCTCAGCCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAATGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCAGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.643

100

0.916
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.643

100

0.916
  recA Pseudomonas stutzeri DSM 10701

72.941

97.983

0.715
  recA Acinetobacter baylyi ADP1

72.303

98.847

0.715
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

68.103

100

0.683
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.948

0.646
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.625

0.64
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus mutans UA159

58

100

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

93.084

0.585
  recA Streptococcus pneumoniae Rx1

62.848

93.084

0.585
  recA Streptococcus pneumoniae D39

62.848

93.084

0.585
  recA Streptococcus pneumoniae R6

62.848

93.084

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

58.358

98.271

0.573
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.084

0.565

Multiple sequence alignment