Detailed information NTG0407691

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY39_RS11335
• Genome accession: NZ_CP046783
• Coordinates: 2242154..2243143 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2013V-1181
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2237154..2248143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY39_RS11320	recA	2237703..2238746 (-)	1044	WP_021450024.1	recombinase RecA	Machinery gene
GPY39_RS11325	pncC	2238946..2239428 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
GPY39_RS11330	mutS	2239513..2242074 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
GPY39_RS11335	rpoS	2242154..2243143 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY39_RS11340	-	2243224..2244147 (-)	924	WP_021450027.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY39_RS11345	-	2244162..2244788 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY39_RS11350	surE	2244788..2245564 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
GPY39_RS11355	truD	2245564..2246607 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
GPY39_RS11360	ispF	2246654..2247130 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY39_RS11365	ispD	2247148..2247852 (-)	705	WP_017449147.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY39_RS11370	ftsB	2247854..2248135 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407691 GPY39_RS11335 WP_005478537.1 2242154..2243143(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1181]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407691 GPY39_RS11335 WP_005478537.1 2242154..2243143(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1181]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851