Detailed information NTG0407571

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GPY34_RS19995
• Genome accession: NZ_CP046778
• Coordinates: 2282030..2283073 (+)
• Length: 347 a.a.
• NCBI ID: WP_005478550.1
• Uniprot ID: Q87LR1
• Organism: Vibrio parahaemolyticus strain 2014V-1125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2277030..2288073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY34_RS19980	rpoS	2277632..2278621 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY34_RS19985	mutS	2278701..2281262 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GPY34_RS19990	pncC	2281347..2281829 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY34_RS19995	recA	2282030..2283073 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GPY34_RS20000	recX	2283197..2283664 (+)	468	WP_005493947.1	recombination regulator RecX	-
GPY34_RS20005	alaS	2283807..2286389 (+)	2583	WP_005455546.1	alanine--tRNA ligase	-
GPY34_RS20010	-	2286592..2287779 (+)	1188	WP_023650357.1	aspartate kinase	-
GPY34_RS20015	csrA	2287872..2288069 (+)	198	WP_004415691.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37432.91 Da
• Isoelectric Point: 5.1850

>NTDB_id=407571 GPY34_RS19995 WP_005478550.1 2282030..2283073(+) (recA) [Vibrio parahaemolyticus strain 2014V-1125]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF

Nucleotide

• Length: 1044 bp

>NTDB_id=407571 GPY34_RS19995 WP_005478550.1 2282030..2283073(+) (recA) [Vibrio parahaemolyticus strain 2014V-1125]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTCGAGCTTATCGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCGCCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAGACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: Q87LR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	91.643	100	0.916
recA	Vibrio cholerae O1 biovar El Tor strain E7946	91.643	100	0.916
recA	Pseudomonas stutzeri DSM 10701	72.941	97.983	0.715
recA	Acinetobacter baylyi ADP1	72.303	98.847	0.715
recA	Acinetobacter baumannii D1279779	74.695	94.524	0.706
recA	Glaesserella parasuis strain SC1401	70.859	93.948	0.666
recA	Neisseria gonorrhoeae MS11	65.903	100	0.663
recA	Neisseria gonorrhoeae MS11	65.903	100	0.663
recA	Neisseria gonorrhoeae strain FA1090	65.903	100	0.663
recA	Ralstonia pseudosolanacearum GMI1000	71.383	89.625	0.64
recA	Helicobacter pylori 26695	60.294	97.983	0.591
recA	Helicobacter pylori strain NCTC11637	62.08	94.236	0.585
recA	Streptococcus pneumoniae Rx1	62.848	93.084	0.585
recA	Streptococcus pneumoniae R6	62.848	93.084	0.585
recA	Streptococcus pneumoniae D39	62.848	93.084	0.585
recA	Streptococcus pneumoniae TIGR4	62.848	93.084	0.585
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.636	91.931	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	92.507	0.579
recA	Streptococcus mitis NCTC 12261	61.92	93.084	0.576
recA	Streptococcus pyogenes NZ131	61.231	93.66	0.573
recA	Streptococcus mitis SK321	61.61	93.084	0.573
recA	Streptococcus mutans UA159	60.923	93.66	0.571
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.507	0.568
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.215	95.389	0.565
recA	Lactococcus lactis subsp. cremoris KW2	60.681	93.084	0.565
recA	Latilactobacillus sakei subsp. sakei 23K	60.748	92.507	0.562