Detailed information NTG0407569

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY34_RS19980
• Genome accession: NZ_CP046778
• Coordinates: 2277632..2278621 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2014V-1125
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2272632..2283621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY34_RS19945	ftsB	2272640..2272921 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY34_RS19950	ispD	2272923..2273627 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY34_RS19955	ispF	2273645..2274121 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY34_RS19960	truD	2274168..2275211 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GPY34_RS19965	surE	2275211..2275987 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GPY34_RS19970	-	2275987..2276613 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY34_RS19975	-	2276628..2277551 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY34_RS19980	rpoS	2277632..2278621 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY34_RS19985	mutS	2278701..2281262 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GPY34_RS19990	pncC	2281347..2281829 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY34_RS19995	recA	2282030..2283073 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407569 GPY34_RS19980 WP_005478537.1 2277632..2278621(+) (rpoS) [Vibrio parahaemolyticus strain 2014V-1125]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407569 GPY34_RS19980 WP_005478537.1 2277632..2278621(+) (rpoS) [Vibrio parahaemolyticus strain 2014V-1125]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851