Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPY46_RS22370 Genome accession   NZ_CP046776
Coordinates   2750302..2751345 (-) Length   347 a.a.
NCBI ID   WP_025606301.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM43962     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2745302..2756345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS22350 csrA 2745306..2745503 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  GPY46_RS22355 - 2745596..2746783 (-) 1188 WP_025606297.1 aspartate kinase -
  GPY46_RS22360 alaS 2746986..2749568 (-) 2583 WP_005455546.1 alanine--tRNA ligase -
  GPY46_RS22365 recX 2749711..2750178 (-) 468 WP_140112252.1 recombination regulator RecX -
  GPY46_RS22370 recA 2750302..2751345 (-) 1044 WP_025606301.1 recombinase RecA Machinery gene
  GPY46_RS22375 pncC 2751546..2752028 (-) 483 WP_029826209.1 nicotinamide-nucleotide amidase -
  GPY46_RS22380 mutS 2752113..2754674 (+) 2562 WP_025535213.1 DNA mismatch repair protein MutS -
  GPY46_RS22385 rpoS 2754753..2755742 (-) 990 WP_025500977.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37460.93 Da        Isoelectric Point: 5.1850

>NTDB_id=407520 GPY46_RS22370 WP_025606301.1 2750302..2751345(-) (recA) [Vibrio parahaemolyticus strain AM43962]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIARTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=407520 GPY46_RS22370 WP_025606301.1 2750302..2751345(-) (recA) [Vibrio parahaemolyticus strain AM43962]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTGCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATTATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAGAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.354

100

0.914
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.354

100

0.914
  recA Pseudomonas stutzeri DSM 10701

72.941

97.983

0.715
  recA Acinetobacter baylyi ADP1

72.303

98.847

0.715
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

65.903

100

0.663
  recA Neisseria gonorrhoeae MS11

65.903

100

0.663
  recA Neisseria gonorrhoeae strain FA1090

65.903

100

0.663
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.625

0.643
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus pneumoniae Rx1

62.848

93.084

0.585
  recA Streptococcus pneumoniae R6

62.848

93.084

0.585
  recA Streptococcus pneumoniae D39

62.848

93.084

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

93.084

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.084

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.507

0.562

Multiple sequence alignment